Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1828 ATGGAAGGCCGGTATCTATCGTTCAGGAAAGTTCTCACAGGAACTCAATTGACTCCTAAATGGTTGCAGCATCATTTCATCGTAGTCAAAATATTCACATACCCTAGCCTCCTTCACTGCTTTCCCCCTGCGACTCCTTTTCCTTCCCCCTGTTTCACCTCTCCGACGACTTGTACTTCGCCACCGCCGTTGCCTGCTCTCCCGTGCTCACTCCTCGACGTTACTTTTGAACTTCAGCTCATTGTCTTCAAGTGTTTTACTTGGGTCACAAGCTTGCTATCCTCTCAAACATGGCTACCAGACTTATGTTTGAGAACTCTTGTGAAGTTGGAGTGTTCTCTAAACTTACCAATGCCTATTGTTTGGTTGCCATTGGAGGTTCTGAAAGCTTCTACAGTTTGTTATGTTTATGCTGTATTTGAGTCTGAATTAGCAGGTGTTATCCCTGTTGTGAAGACCTCCATTGCTGGCACTCGTATTGTTGGCCGCCTTTGTGCTGGTAACAAGAATGGGCTTCTCTTGCCTCACAATACCACAGATCAAGAACTTCAACATTTGAGAAACAGTCTACCAGATCAAGTTGTTGTTCAGCGCGTAGGAGAAAGATTATCTGCTCTTGGAAATTGTATAGCATGTAATGACCATGTGGCACTCGCGCACACTGATCTTGACAGGGAAACTGAAGAGCTGATTTCAGACGTACTAGGAGTAGAAGTTTTCAGGCAGACCATTGCCGGAAATATTCTTGTTGGAAGTTACTGTGCCTTCTCCAACCGAGGTGGTTTGGTTCATCCTCACACTTCGATTGAAGACTTGGATGAGCTCTCAACACTTCTTCAGGTTCCTTTGGTTGCTGGGACTGTGAATCGTGGTAGTGAGGTCATAGCTGCTGGCATGACTGTTAATGACTGGACTGCATTTTGTGGATCAGACACAACAGCAACAGAACTCTCTGTGGTTGAGAATGTTTTCAAGCTCAGGGAAGCTCAACCTAGTGCTATTGTGGACGAGATGAGGAGATCACTTATTGATAGCTACGTTTAA 1044 0.4511 MEGRYLSFRKVLTGTQLTPKWLQHHFIVVKIFTYPSLLHCFPPATPFPSPCFTSPTTCTSPPPLPALPCSLLDVTFELQLIVFKCFTWVTSLLSSQTWLPDLCLRTLVKLECSLNLPMPIVWLPLEVLKASTVCYVYAVFESELAGVIPVVKTSIAGTRIVGRLCAGNKNGLLLPHNTTDQELQHLRNSLPDQVVVQRVGERLSALGNCIACNDHVALAHTDLDRETEELISDVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVVENVFKLREAQPSAIVDEMRRSLIDSYV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1828 347 TIGRFAM eIF-6: putative translation initiation factor eIF-6 136 326 IPR002769 GO:0042256|GO:0043022
Lele08g1828 347 SUPERFAMILY Pentein 136 326 - -
Lele08g1828 347 FunFam Eukaryotic translation initiation factor 6 126 327 - -
Lele08g1828 347 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 135 346 IPR002769 GO:0042256|GO:0043022
Lele08g1828 347 Hamap Translation initiation factor 6 [eif6]. 110 347 IPR002769 GO:0042256|GO:0043022
Lele08g1828 347 SMART eIF6neu2 121 306 IPR002769 GO:0042256|GO:0043022
Lele08g1828 347 CDD IF6 136 325 IPR002769 GO:0042256|GO:0043022
Lele08g1828 347 Pfam eIF-6 family 136 305 IPR002769 GO:0042256|GO:0043022
Lele08g1828 347 Gene3D - 124 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1828 Lele-ChrLele08 12677415 12685270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1828 137 347 Eukaryotic Initiation Factors Gene Family AT3G55620 87.204 6.33e-140 395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1988 05 14150661 14154725 Lele08g1828 08 12677415 12685270 hybridization
Lele06g1825 06 12809103 12815620 Lele08g1828 08 12677415 12685270 hybridization