Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1827 ATGGCTTCTTTTAAGCTTTCATTCTGTGCTATTTTGTTCGTAACTTTCTCTTGTTCTCTTTTATTCCAAACCCTTGCTAACAGCAACGGTACTTCTACTTTAGTCGTAGATGTTAGTTCTGGAAAGCCAATCTCCAAATATTTTTTCGGAGTATTTTTTGAGGAAATTAATCATGCTGGTGCCGGGGGATTGTGGGCAGAGCTTGTCAATAATAGAGGTTTCGAAGCTGGAGCCACAGAGCTTGGGGTTCCGTCGAGCATCACTCCATGGACAATAATAGGAGATGGATCCAATATTAATGTCCAAACTGAACCTACCTCCTTGTTTCCAACTAATCCAATGGCTGTCAAAATGGATATCCTTTGTCCTTCTCCGGCAATATGCCCTAATGGTGTTGGTCTCTCTAACCCTGGTTTTTGGGGCATGAATATTGAGCAAGGAAAGGAATATAGAGTTGTATTCTATCTTCGTGCCTTCGGACCAATTAATTTGAAAGTGGCATTTACAGGAGCAGATGGCAAAGAATTGGCTTCAACTTACATCAAGGCTTCTGCAACTCATGTTGCAAAGTGGAAAAGGTTCGAGAATATTCTAAAAGCTAAAGCATCGGACGTTGAAGCAAGCCTGCAATTGACAACCAATCAAAAAGGAGTTATTTGGTTGGATCAAGTCTCAGCAATGCCTTTAGATACATATAAAGGACATGGCTTTAGAAAAGACCTTTTTCAAATGGTGGCCGATTTAAAGCCAACATTTCTTAGATTTCCTGGTGGTACTTATGTTGAAGGTGATTATTTGAGAAATGCATTTAGATGGAAGAAGACCATCGGACCATGGGAGAAGAGACCTGGTCATTTTAATGATATATGGGGTTATTGGGTTGATGATGGATTTGGTTATTTAGAATTTCTTCAATTATCCGAGGACTTTGGTACTGCTCCAATATGGGTATTTAACAATGGTTTCAGTCATCATGATCATGTTAATACCAGCGAAGTTGATCCTATGGTTCAAGAAGCTCTTGATGGCATTGAATTTGCAAGAGGTCCTATCACATCAAGATGGGGTAGAGTAAGAGCCGCTTTAGGTCATCCCAAACCTTTTGATTTGCGATATGTTGCTATTGGAAACGAGGATTGTAGAATGGAAAATTACCAAGGAAACTATCTCAAATTTTATAACGCCATAAAGCGTGCATATCCAGATATGCAAACTATATCAAATTGCGATGCTACCGGAGGACCCTTGAAGCATCCGGCTGAGTTGTATGACTTCCATATATACACAAATGCTAAGGATATGTTCTCAAAGTATACCAAGTTTGATAATATGCCTCGTTCTGGTCCTAAGGCTTTTGTCAGTGAGTATGCTGTTTGGAATGATGATGCTAGAAATGGAACCCTCTTATCTGCGTTAGGTGAAGCTGCATTTCTTATGGGATTAGAGAAGAATAGTGAGGTTGTTGAAATGGTTAGCTATGCACCACTCTTTGTGAATACAAACAACAAGAGGTGGCTACCCGATGCTATCGTATTCGATTCTCATCAAAATTATGGAACTCCAAGTTATTATCTACAAAAGCTATTCTCAGAGTCCAGTGGAGCAATGTATTTGAACTCAACACTTCAAGCTCCTTCTTCAGTTGTTGCATCTGTAATTACCTACACAAGTTCAACAGACAATAAAAGTTACCTAAGAGTGAAGGTTGTGAACTTCAACAACAATCCTACAACTCTTAAGATAACTTTCAATGGTTTAGACGCAAATGTGAAACTGTCTAAAGCAACAAAGACAGTGCTCACATCTTCCAATGTAATGGACGAAAATTCCTTCAAAGAGCCTACAAAGATTGCTCTGGTGCAAAGCCCATTAGAGAATGTTGGAAAAGATACAACTGTCACACTTCCTCCAAATTCAATCGTAGCTTTTGATTTTCCAAAGTGA 1944 0.3925 MASFKLSFCAILFVTFSCSLLFQTLANSNGTSTLVVDVSSGKPISKYFFGVFFEEINHAGAGGLWAELVNNRGFEAGATELGVPSSITPWTIIGDGSNINVQTEPTSLFPTNPMAVKMDILCPSPAICPNGVGLSNPGFWGMNIEQGKEYRVVFYLRAFGPINLKVAFTGADGKELASTYIKASATHVAKWKRFENILKAKASDVEASLQLTTNQKGVIWLDQVSAMPLDTYKGHGFRKDLFQMVADLKPTFLRFPGGTYVEGDYLRNAFRWKKTIGPWEKRPGHFNDIWGYWVDDGFGYLEFLQLSEDFGTAPIWVFNNGFSHHDHVNTSEVDPMVQEALDGIEFARGPITSRWGRVRAALGHPKPFDLRYVAIGNEDCRMENYQGNYLKFYNAIKRAYPDMQTISNCDATGGPLKHPAELYDFHIYTNAKDMFSKYTKFDNMPRSGPKAFVSEYAVWNDDARNGTLLSALGEAAFLMGLEKNSEVVEMVSYAPLFVNTNNKRWLPDAIVFDSHQNYGTPSYYLQKLFSESSGAMYLNSTLQAPSSVVASVITYTSSTDNKSYLRVKVVNFNNNPTTLKITFNGLDANVKLSKATKTVLTSSNVMDENSFKEPTKIALVQSPLENVGKDTTVTLPPNSIVAFDFPK 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1827 647 Pfam Alpha-L-arabinofuranosidase C-terminal domain 455 639 IPR010720 GO:0046373|GO:0046556
Lele08g1827 647 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Lele08g1827 647 PANTHER ALPHA-L-ARABINOFURANOSIDASE 1 10 645 - -
Lele08g1827 647 SMART alpha_l_af_c 454 639 IPR010720 GO:0046373|GO:0046556
Lele08g1827 647 FunFam Alpha-L-arabinofuranosidase 1 224 530 - -
Lele08g1827 647 Gene3D Glycosidases 213 528 - -
Lele08g1827 647 Gene3D - 529 646 IPR013780 -
Lele08g1827 647 SUPERFAMILY (Trans)glycosidases 209 537 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1827 Lele-ChrLele08 12662664 12665889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1827 1 647 Glycoside Hydrolase AT3G10740 57.576 0.0 779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele14g1634 14 23930618 23937111 Lele08g1827 08 12662664 12665889 CCT
Lele15g0722 15 4171883 4179143 Lele08g1827 08 12662664 12665889 CCT
Lele16g0729 16 4111822 4119496 Lele08g1827 08 12662664 12665889 CCT
Lele07g2037 07 13622866 13627718 Lele08g1827 08 12662664 12665889 ECH
Lele08g1827 08 12662664 12665889 Lele08g1827 08 12662664 12665889 ECH
Lele05g1988 05 14150661 14154725 Lele08g1827 08 12662664 12665889 hybridization
Lele06g1822 06 12786972 12790175 Lele08g1827 08 12662664 12665889 hybridization