Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1812 ATGGATCAGAAAATATCGGAAGAAGGTGGACAAAGCGGTTTGAATTTTAAGTGTGCGAAGATCCTTCATGGAGCTGATAAATCTGTTGCTATTCAGACTCCAGAGAAGACTAGTGAGCCTTTACCTACCAAATCCAAGGAGGGATCCACCCAGCTTCCAAAAACATACAAGGCTTTAGCAGATTTATTTGACCATATGGGTTGTTCACTGAGGTTGCTTTGTCTGTGTAAAAAATCTACCACCTTTCAAAACATCTGTTCTCAGGTTGAAGTTCTCGCTAAAAGAAAATTCTTGTACACGGATCTTGCGCAGATAAAGTATTTACTTCCTGAAGCCATACATATAGAGAAGGTATTAGTACATGACAATAGAAACTTGTGTATGAAGCCTGATTTGAAGATCACCTTGGTACATGATGTTTTGCTGGGACACTCTGGTGAAAATACTTATATGGCTCTCCGGCAACTTTTTGGTTCTAGGCTACTTGAGTTCTTCAATACGCATCCAGAGAATACTGATATTCCAGAAGCTACACTACCAGAACCTTTTCAACAAAGAACTCATAGCTTGATTTGTGAGGACTTGCCTGTAGATCCTTCAACAATACGCTCATCATCAACTTCCGATCAAAATCAACAGCTATTACAGGAATGTCAGCCATATCCTTTTAAAAGGCATTTCTCAAAGAAGAATGTTGTGGCAGAGACAGAAAATAATGTTGTATCAAGTCAAATTGCTCAGTCACATCATTCATCTGATTGCTTGGATAATGAAGGAGGTGAAGGTGACAATGAATGGCAGAAAAAATGTCTTACTTCATATTTGAAATCTGATAGCGCAAATTATCAGGATATGGAAGAAGGACAGCAGAATGAATCATGTTCTGTGGGATTCCATTGTAGTGTTAATACACCAGCACGCCTGATTTGCTCTCCACAGTCTGTTAGTTGTGGTAGTTATGAAAGCTCTTATATCAAGATTACCTCATCCACAGATATCTTAATGACAGAGACACCTGCTCAGTCAACACCTAGAAGAGGGGCGCCCAGTTCTGATGTTAAGCCTAAGAATATGACCGCCCAAAATTCAATTTCAGGCAATAAGCATGTAAAAAGAGTTCTTTTTTCACATGAAGGTGATTATGACGCTGACAAGTTAGAATCAAAGAGAGATGCTTGTGGTACCATCCCTGAAGCCAGTCGAGCATGTACCGAGGATTTTAATGTTTCTAATTCTGTTGTTCTATCCCAGAAGGTGGCTGAGGGCGTTGATTGTTCTCATGAAAATATGAATCAGACACAAGGTGGTTCAACAACCTGGCAGCAGACGCCTTCATCGTTGCTTGGTCTTGTTGATGTGATATATTCTATATTTAGTTCCATCCAATGCTCTCCAATCACAAAAGAGGAGTTCCTGCATAAGATAATAATGAACAGTTTAGATTTTGTTGAGATGAGAGAAGCTGAAGAGCAGATTGATTTTCTTGAAAAGGCAGTGCCAGATTGGATCTACAGAAAGTTGGGCCCTAGTGGAGATACTATGTACTGTATCAAGGAAGCGTCAGATTTGGAGTCTGTTCGATCAAGGCTATCCAGCAATAGCCTTAAGGCTTTTATAAACATTGGTGAATCGGTGCCAGAAGTGGTTCGAAATGATAAGCAGCTAAATACCGGGGGAAAAAATGGTTGA 1689 0.3996 MDQKISEEGGQSGLNFKCAKILHGADKSVAIQTPEKTSEPLPTKSKEGSTQLPKTYKALADLFDHMGCSLRLLCLCKKSTTFQNICSQVEVLAKRKFLYTDLAQIKYLLPEAIHIEKVLVHDNRNLCMKPDLKITLVHDVLLGHSGENTYMALRQLFGSRLLEFFNTHPENTDIPEATLPEPFQQRTHSLICEDLPVDPSTIRSSSTSDQNQQLLQECQPYPFKRHFSKKNVVAETENNVVSSQIAQSHHSSDCLDNEGGEGDNEWQKKCLTSYLKSDSANYQDMEEGQQNESCSVGFHCSVNTPARLICSPQSVSCGSYESSYIKITSSTDILMTETPAQSTPRRGAPSSDVKPKNMTAQNSISGNKHVKRVLFSHEGDYDADKLESKRDACGTIPEASRACTEDFNVSNSVVLSQKVAEGVDCSHENMNQTQGGSTTWQQTPSSLLGLVDVIYSIFSSIQCSPITKEEFLHKIIMNSLDFVEMREAEEQIDFLEKAVPDWIYRKLGPSGDTMYCIKEASDLESVRSRLSSNSLKAFINIGESVPEVVRNDKQLNTGGKNG 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1812 562 Pfam DNA replication factor CDT1 like 52 117 IPR014939 -
Lele08g1812 562 SUPERFAMILY "Winged helix" DNA-binding domain 49 183 IPR036390 -
Lele08g1812 562 MobiDBLite consensus disorder prediction 337 362 - -
Lele08g1812 562 SMART CDT1_2 52 181 IPR014939 -
Lele08g1812 562 CDD Cdt1_m 33 199 IPR014939 -
Lele08g1812 562 PANTHER DNA REPLICATION FACTOR CDT1 38 531 IPR045173 GO:0003677|GO:0030174|GO:0071163
Lele08g1812 562 Gene3D - 438 536 IPR038090 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1812 Lele-ChrLele08 12530370 12534526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1812 450 530 Core DNA Replication Machinery Family AT3G54710 43.210 5.81e-14 72.4