Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1794 ATGACGATTCGCAATGCCCCTAAGCATTTTAAAGTAGTAGTTCTGCCTCTTTCAAGAAGAGAGAAAGTTTCAGTTGGATCAGATGCTAAAGAGATTGCCTCATCTATCACTGCCATTGCAAATAAGAAGTTAAAAGCAGAAAAAGAAGCAAATACTGGTAAAAAGAAGACAGGTGGGAAGAAAAAGCAGCTACATCTTGAAAAACCATATGATGATTTGGTTTCTGATCCATATAGTGCTATGGATGATGATTATGATTTCACATTTGTCGTTTCCTTTTGGCTTGTAAAGCTGAAATTTGGAATGGCTTTTGAGTTTTTGACAACCAAGTTGAAGTGTAAACGTTTGCTAACTTTCATTTTGAAATATTATGTTCTTCTTGTTTCTTACCATATGCAGATCTTAGAGGGCCTTCTTAAGCTGCCTGAAAACAAGGAATGTGCTGACTGCCGAAACAAGGCACCACGATGGGCAAGTGTGAATCTAGGAATTTTCATATGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCTACAACTTTGGATACATGGTTGCCGGAACAAGTCTCTTTCATGCAATTCATGGGTAATTTGAAGTCAAATGAGCATTGGGAGGCAGAACTGCCACCAAATTTTGATATAATTGGCTTCGGACTTGAGAAGTTTATTCGTTCCAAGTATGTGGAGAAAAAATGGGCTAAAGTTGGTGGAGTAAATCCAGCTTCAAAAGCAGGTGAAATCCTCTGTAATCTGAATCTGAATCTGAATCTGAATGAGTCACCAGCTGGTCCCAAGGGCGGCTTTTCCAGGGCCAATAGAAGGCTTTCTCTCGAGGAAAGCATTCTTACAAAACACATGGAACAGATCCTGCCCCCAGTGACGGGACATCGTGGGGGTTCTCTTGACATTGCAAAAAGTACCACCCCTCCGGTAAGGAGGCCATGCCCATCGGTTGATTTCGATAAGTCCCCTCTAAGCAATGGCAATGCTGACTTTTTCAGCATGTTTGGCGCCCATGGTGATAAGAAGGACTCTGTAACTGTGCCTCCTACTAGCTGGACAACTTTTGACTGTAAGACAATGATACTTACATCATACATCATCATTTAA 1134 0.4136 MTIRNAPKHFKVVVLPLSRREKVSVGSDAKEIASSITAIANKKLKAEKEANTGKKKTGGKKKQLHLEKPYDDLVSDPYSAMDDDYDFTFVVSFWLVKLKFGMAFEFLTTKLKCKRLLTFILKYYVLLVSYHMQILEGLLKLPENKECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVSFMQFMGNLKSNEHWEAELPPNFDIIGFGLEKFIRSKYVEKKWAKVGGVNPASKAGEILCNLNLNLNLNESPAGPKGGFSRANRRLSLEESILTKHMEQILPPVTGHRGGSLDIAKSTTPPVRRPCPSVDFDKSPLSNGNADFFSMFGAHGDKKDSVTVPPTSWTTFDCKTMILTSYIII 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1794 377 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 130 302 IPR044520 GO:0005096
Lele08g1794 377 SMART arf_gap_3 133 248 IPR001164 GO:0005096
Lele08g1794 377 Pfam Translation initiation factor eIF3 subunit 27 86 IPR013906 GO:0003743|GO:0005737|GO:0005852
Lele08g1794 377 SUPERFAMILY ArfGap/RecO-like zinc finger 132 241 IPR037278 -
Lele08g1794 377 CDD ArfGap 135 235 - -
Lele08g1794 377 Gene3D Arf GTPase activating protein 127 244 IPR038508 -
Lele08g1794 377 ProSiteProfiles ARF GTPase-activating proteins domain profile. 132 248 IPR001164 GO:0005096
Lele08g1794 377 PRINTS HIV Rev interacting protein signature 163 180 IPR001164 GO:0005096
Lele08g1794 377 PRINTS HIV Rev interacting protein signature 144 163 IPR001164 GO:0005096
Lele08g1794 377 PRINTS HIV Rev interacting protein signature 184 205 IPR001164 GO:0005096
Lele08g1794 377 FunFam stromal membrane-associated protein 1 isoform X1 126 245 - -
Lele08g1794 377 Pfam Putative GTPase activating protein for Arf 134 242 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1794 Lele-ChrLele08 12346304 12353611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1794 135 242 C2H2 Transcription Factor Family AT4G05330 45.614 5.12e-26 105