Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1783 ATGGCAACCACTGTTACTGCCACAACTCCTGGAACTTCGTTTCCCGTTTCTTTCCGCTACAATATTAGGAGAATCAGAATTAGTGTGGCTAACATTCGAATCAACAGAAGTTTCCCTTCCTTGTCACTCAGAAATGGCTCCTCCTTCGCGTTGGCGTGTTTACCTCCTCCTCCTCCTCCTCCTGCTTATCAATCACCAATTCCATCTTCCAATACCAAACCCACTTCTTCTCCTTCAACTAAGCTCTACGTCAGTGGGCTATCTTTTCGTACCACTGAAGAGAGCCTGCGAAATGCCTTTACGAAGTTTGGTGAACTTGTGGGAGTCAACCTGGTGATGGATAAAATAGCAAATACACCAAGAGGATTTGCCTTTCTTCATTACGCAACTGAAGAGGATTCTCAGAAGGCTATTGATGGAATGCATGGGAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCAAAACCAAGATCAGAGTTGCGCCAAAGGCTTAACCAAAACCCTAGATAG 516 0.4477 MATTVTATTPGTSFPVSFRYNIRRIRISVANIRINRSFPSLSLRNGSSFALACLPPPPPPPAYQSPIPSSNTKPTSSPSTKLYVSGLSFRTTEESLRNAFTKFGELVGVNLVMDKIANTPRGFAFLHYATEEDSQKAIDGMHGKFLDGRVIFVEVAKPRSELRQRLNQNPR 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1783 171 SMART rrm1_1 81 154 IPR000504 GO:0003723
Lele08g1783 171 SUPERFAMILY RNA-binding domain, RBD 60 168 IPR035979 GO:0003676
Lele08g1783 171 PANTHER NUCLEOLAR PROTEIN 8 56 164 - -
Lele08g1783 171 MobiDBLite consensus disorder prediction 60 79 - -
Lele08g1783 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Lele08g1783 171 Gene3D - 65 171 IPR012677 -
Lele08g1783 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 151 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1783 Lele-ChrLele08 12252627 12255307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1783 80 169 Eukaryotic Initiation Factors Gene Family AT4G34110 30.851 7.89e-11 57.8