Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1762 ATGTCATCAGTTCCAAGCTCCGAGCAGTTTTCCACCGCAGCGAATGGCACTAATAACAGTAGCACTGCAAACAAACGGAAGAGAAGACCTGCGGGAACACCAGATCCGGATGCGGAGGTGGTGTCGCTGTCGCCGAAGACGCTATTGGAATCGGACCGGTACGTGTGTGAGATCTGTAACCAGGGGTTTCAGAGGGACCAGAACTTGCAGATGCACAGGAGGAGGCATAAGGTTCCATGGAAGCTGCTCAAAAGGGAGACGCCGGTGGTGAGGAAGAGAGTGTTTGTTTGCCCGGAGCCGACCTGCTTGCACCATGACCCTTGCCACGCCCTCGGCGACCTCGTCGGAATCAAGAAACACTTCCGCCGGAAACACAGCAACCACAAACAATGGGTCTGCCACCGCTGCTCCAAGGCTTACGCAGTCCAGTCCGATTACAAGGCTCATCTCAAGACCTGTGGCACTCGCGGCCATTCCTGTGATTGTGGCCGAGTCTTCTCCAGGGTGGAGAGCTTCATCGAGCACCAAGATGCGTGCAATATGGGGCGACTCCGGCCGGAGTCGCAGCCGCAGCAACCTGCGTGTCTGTCTCGAACTGCGTCGAGCCCGAGTCCGTCGAGCGAGACCAATTTCAGCGCCGGTCCAGCATGGCCACCACCGGGTTTAGTGATACCAAAGCCAACAACGGCGGAACCCACATTCTTCCATAACAATAATAACCCTATCGCCGATCAAACCTCGTCCAAGACCAACAATCAAAACAACAACAAGAGGCAATACCCAAACTTGGACCTTCAGCTCTCAACCGCCACGCCCCACGTCGACAACAACGTCGTCGTCGGAAGAGACGACACCCATTCGACCCAGTTACAGCTCTCAATCGGGTCTTCTGACATGAGCGATAAGAACGAATCGAATAGGAATTCATCACCGAAGGAGAGCAGTAACAGCAGCGATAAGCCGGCGGCGGCTTTGATGGTGGAGAAAGCGTACGCGGAGGCGGCGAGGAAAGAAGCAAAGAGGCAGATGGAGGCAGCGGAGCAAGAGTTCGCAAACGCCCGGAGAATAAGACAGCAAGCTCAAGCCGAACTGGATAAAGCATATGCTTTGAAAGAACAAGCGATTAAACAGATCAATTCCACCATGCTTCAGATCACATGTCAAGCTTGTAAGCAGCAGTTTCAACAGCAAGCTCAAAAATTAATAACGGAAGGTGGCCAAGTATTAGACAACAACAACAATAACGGGAAAGAAAACCACGAACTAGATCGATGA 1275 0.531 MSSVPSSEQFSTAANGTNNSSTANKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPQQPACLSRTASSPSPSSETNFSAGPAWPPPGLVIPKPTTAEPTFFHNNNNPIADQTSSKTNNQNNNKRQYPNLDLQLSTATPHVDNNVVVGRDDTHSTQLQLSIGSSDMSDKNESNRNSSPKESSNSSDKPAAALMVEKAYAEAARKEAKRQMEAAEQEFANARRIRQQAQAELDKAYALKEQAIKQINSTMLQITCQACKQQFQQQAQKLITEGGQVLDNNNNNGKENHELDR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1762 424 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Lele08g1762 424 MobiDBLite consensus disorder prediction 292 322 - -
Lele08g1762 424 SMART c2h2final6 54 76 IPR013087 -
Lele08g1762 424 SMART c2h2final6 131 158 IPR013087 -
Lele08g1762 424 SMART c2h2final6 95 125 IPR013087 -
Lele08g1762 424 SUPERFAMILY beta-beta-alpha zinc fingers 51 77 IPR036236 -
Lele08g1762 424 Gene3D Classic Zinc Finger 42 127 - -
Lele08g1762 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 391 IPR031140 -
Lele08g1762 424 MobiDBLite consensus disorder prediction 1 27 - -
Lele08g1762 424 MobiDBLite consensus disorder prediction 231 259 - -
Lele08g1762 424 MobiDBLite consensus disorder prediction 292 321 - -
Lele08g1762 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Lele08g1762 424 MobiDBLite consensus disorder prediction 185 213 - -
Lele08g1762 424 MobiDBLite consensus disorder prediction 183 259 - -
Lele08g1762 424 MobiDBLite consensus disorder prediction 1 43 - -
Lele08g1762 424 FunFam protein indeterminate-domain 12-like 33 101 - -
Lele08g1762 424 Coils Coil 329 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1762 Lele-ChrLele08 12029070 12031205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1762 15 398 C2H2 Transcription Factor Family AT2G01940 57.868 4.62e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g1762 None None None