Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1745 ATGGTTCTAGGATGGCGAAGGAGAAAGAACGCCCGTCGCAACGACAAACTTCATCTCGAGCTCGTCGTTCCCAACCACTTCCGGTGTCCGATTTCCCTTGATTTGATGAAAGATCCCGTCACATTGTCCACCGGAATCACCTACGATCGTGAAAACATCGAAAGGTGGTTCCTTGACGGAAATTTCACTTGCCCTGTTACCAATCAGATTCTTCGGAGCTTCGATCTCATTCCTAATCACACTCTTCGCATCATGATTCAGGACTGGTGTGTTGAAAATCGACAACATGGGGTTGAGAGAATCCCCACTCCGAGAATTCCCATTGCCCCAATCGAAGTCGCAGAGCTTCTTCTTCATTTGAAATCGTCGGTGAGGCGTTTGGATCAGTACGGTTGTCTCGAACTGGTTCAGAAAATGGAGAAATGGGGTGAAGAGAGCGAGAGGAACAAGAAGTGCATAGTTGAAAATGGAGCTATGGCTGGTCTGGCCTCTGCATTTGATTCCTTCGCGAATGATTCAATTGAGAAGAATCTGAGTGTTTTGGAAGAGATTTTGTCCGCTCTGAATTGGATGTTCCCACTTCAAATGGAAGCCCAGAAATCTTTGGGTTCACAAGCTTCGTTACGTTGCATGGTGTGGTTTCTGAAACATCAAGATCTTGCATGGAAAGACAAATCCATTGTTGCTCTCAGGGAGCTTTTATCTTTTGGAAACGAACAACATTTGAATGATCTTGCAGAAATTGAAGGGGTCAACGAATTATTGTTGGAATTAATCACGAAAAGACTGAGTCCAACCATTACAAAAGCTTCATTAGCGGTAGTTTTCTATTTGGTTTCATCATCATCTTCTTCTTCCTCAAGAGACAAGATGAAACAGAGATTCATCGAACTGGGGTTGGTGTCTTGTTTACTGGAGATTCTCCTGGATTCAGAAAGAAGCCTCTGTGAGAAGGCTTTGGCAATTTTGGATTCACTATGCTCTTGTAAAGAAGGCAGAGAAAAAGCTTACAGGAACGCGTTGACGATCCCTGTGTTGGTGAAGAAGATTCTGAGAGTTTCAGCCATGGCTACAGATTGCTCTGTTTCTGCAATATGGAAGCTGTGCAAGAATGTTGAAGAGAAAGAAGAGGAAGAGGAAGAAGAAGGAAGTGTTCTGAAAGAGGCACTGCAAGTTGGTGCGTTTCAGAAGCTATTGGTGGTGTTGCAGATTGGATGCGGAGATGAAACGAAGGTGAAAGCAACTGAACTTCTCAAACTTCTGAATCAACACAGGGCAGGGGAGGAGTGTATAGACTCAGATTTCAGGAACCTCAAGAGATCACATTAA 1329 0.4409 MVLGWRRRKNARRNDKLHLELVVPNHFRCPISLDLMKDPVTLSTGITYDRENIERWFLDGNFTCPVTNQILRSFDLIPNHTLRIMIQDWCVENRQHGVERIPTPRIPIAPIEVAELLLHLKSSVRRLDQYGCLELVQKMEKWGEESERNKKCIVENGAMAGLASAFDSFANDSIEKNLSVLEEILSALNWMFPLQMEAQKSLGSQASLRCMVWFLKHQDLAWKDKSIVALRELLSFGNEQHLNDLAEIEGVNELLLELITKRLSPTITKASLAVVFYLVSSSSSSSSRDKMKQRFIELGLVSCLLEILLDSERSLCEKALAILDSLCSCKEGREKAYRNALTIPVLVKKILRVSAMATDCSVSAIWKLCKNVEEKEEEEEEEGSVLKEALQVGAFQKLLVVLQIGCGDETKVKATELLKLLNQHRAGEECIDSDFRNLKRSH 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1745 442 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Lele08g1745 442 SUPERFAMILY ARM repeat 154 389 IPR016024 -
Lele08g1745 442 SUPERFAMILY RING/U-box 22 99 - -
Lele08g1745 442 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
Lele08g1745 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 101 IPR013083 -
Lele08g1745 442 CDD RING-Ubox_PUB 27 69 IPR045210 -
Lele08g1745 442 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Lele08g1745 442 Coils Coil 369 389 - -
Lele08g1745 442 Gene3D - 144 284 IPR011989 -
Lele08g1745 442 PANTHER WDSAM1 PROTEIN 20 432 IPR045185 GO:0061630
Lele08g1745 442 Gene3D - 285 433 IPR011989 -
Lele08g1745 442 FunFam RING-type E3 ubiquitin transferase 23 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1745 Lele-ChrLele08 11875805 11877133 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1745 5 440 U-box Gene Family AT5G37490 43.400 8.85e-119 352