Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1738 ATGATACATCTCTACTTTCTTCAAGTTCATTATACTTGGGAAAAGAACAAAAGAGGAATACTAACTAGCAGCTTCACTTTATGCTTATTTAATCCAGGCAGGATATCCTACGACAGAATAAAAGATAAGACTACAGTTAACAATAACATTACGCCAGAAGTAAGGGAATTTACACTCAAGGAAAAGAGAAAGACAATGGACAGACAGAATTTCAAGAGGGATCAGAGAGGAAACCGAATGCTAGAAAGGACAGCAAAAATGGATTTCCAGTGTGGTACAGAGGAAGAAAAGAACGAAGAAGAGTGTAGTGAAGTTGTCACTACCAATGGAGTAGGTGCATGTATTCTATAATTGATTGCATACGTATCATTTTCTCTATTGTCGCTCTCTCTTCTTGAATTTCGAATCAGGAAATCTCACTTTACGTCAGTGTTGGCGGAGCCGAGCTTTGTGTGTAGAACATTACATACAATGAGCTTGCAAGTCCGACAAGAAAGAAGGGATCGGTCCAGGGTTCCCGCCCAAGGTTCTCGTCAGGAATGGGTTCCAAGAGCATCTGTCGCCCCCACCACCTTGAATTCCCCTCCTTCAAATTATCCAATGGATCAAAATGGTAATGCTGGTTCCTCAAATAATGATGTTGCTCCACCAGCAAATCGGCATAGAAGCAGTCATGGGTCAAGGAGTCACATAAGTCGGCCTATGAATCATAGAAGGGAAAGGGAAAAGGGAAGGAATGAGAATCAGGTGGTGCAACGTGCAAGGGACTCTAATTTGCCTCAATTATTGCAAGAGATCCTGGATAAGCTTATGAAAGGTACTGTAGAATGCATGATTTGCTATGACATCGTCTGTAGATCTGCACCCATCTGGTCTTGCTCAAGCTGCTACTCAATCTTTCACCTGAATTGTGTAAAGAAGTGGGCTCGAGCACCTACTTCTGTTGATGTGTCTGCAGAAAAGAATCAAGGATTTAATTGGCGGTGTCCTGGGTGTCAATCTGTACAGCTGACGTCATCAAGGGAGATTAGGTATGTATGCTTTTGTGGAAAGAGGCCAGACCCACCATCTGATCTGTATCTCACACCACATTCCTGTGGAGAACCATGTGGGAAGCCTCTCGAGAGGGAGCTGTTGGTTAATGGGGGGAGAGGGAGCAAGGAAGATCTTTGCCCTCATGTTTGTGTTTTGCAATGCCATCCAGGTCCATGCCCGCCATGTAAAGCATTTGCACCACCGCGTTTGTGTCCTTGTGGGAAGAAAACTATTACCACAAGGTGCTCTGATCGGTCCTCCGTTCTTACTTGTGGTCAGCATTGCGAAAAGCTTCTTGAGTGTGGGCGTCATAGGTGTGAACGTATTTGCCATGTGGGTCCGTGTGACCCATGTCAGGTTCTAATCGATGCCTCTTGTTTCTGCAACAAGAAGGAGGAGGTTATTCTTTGTGGGGACATGGCTGTGAAGGGTGAAATTGAAGCTGAAGGTGGTGTGTTTTCTTGTGGTTCCAATTGTGGGAAGAAGCTTAGCTGTGGTAATCATGTCTGCAATGAGATTTGTCATCCAGGCAACTGTGGGGAGTGTGAATTCTTACCAAGCCAGATTAAGACATGCTGTTGTGGGAAAACAAAATTGGAGGGGGAACGGCAGAGTTGTCTAGATCCAATACCAACCTGTTCACAAGTATGTGACAAGCCTCTTCCTTGTGGGTTGCATCATTGTAGGGAGGCATGTCATCCTGGGGATTGTTCACCATGTTTGGTTCTAGTCTCCCAAAAGTGTCGGTGTGGTTCAACTTCCCGAACTGTGGAGTGCTATAAGGCAATGAAGGAGAATGAGTCATTTACTTGTGAAAGATCTTGTGGGTGGAAAAAAAACTGTGGAAGGCATCGATGTAGTGAACGGTGTTGTCCGCGTTCTAATCCAAATAATTGTCTAAATGGGGAGTGGGATCCTCACTTTTGTACCATGCCATGTGGAAAGAAGCTAAGGTGCGGGCAACATGCATGTGAAGCGCTATGTCACAGTGGCCATTGTCCATCTTGTCTCGAAACTATCTTCACTGATTTGACTTGTGCTTGTGGTAGGACTTCAATCCCTCCTCCGTTGCCTTGTGGAACACCCTCTCCCTCATGTCAACTTCCATGCTCAGTTCCTCAACCTTGTGGCCATTCAGCCTCCCACAGCTGCCACTTTGGAGATTGTCCCCCTTGTTCGGTGCCTGTGGCAAAAGAATGCATTGGTGGGCATGTGGTTCTTAGGAATATACCTTGTGGATCAAAGGATATTAGATGTAATAAACTCTGTGGGAAGACCAGACGGTGTGGTTTACATGCTTGTGGCAGAACATGTCACTCTCCACCTTGTGATCCATCTGGTTGTGACCAAGGTCTCCGAGCTTCTTGTGGTCAAACATGTGGTGCTCCAAGGAGAGACTGCAGGCATACATGTACAGCTCCATGTCACCCTTCGGCACCATGCCCTGATATAAGATGTGAGTTCTCTGTTACAATTACTTGTTCTTGTGGCCGTATAACAGCAAATGTTCCTTGTGGTGCTGGTGGTTGTAGTGGTAATTATAATGTGGATTCCATACATGAAGCTTCCATAATTCAAAAGTTGCCTGTGCTACTTCAACCAGTGGAAAACAGCAAATCGATTCCCCTTGGACAAAGAAAGCTGACATGTGATGATGAATGTGCTAAGTTGGAGCGTAAAAAGGTTCTTGCTGATGCTTTTGACGTCACCACTCCAAACTTGGATTCTCTTCATTTTGGTGAGAACTCTACTACCACTGAATTGCTTTCTGACATGCTCAGGCGTGATCCTAAGTGGGTTTTGTCTGTGGAGGAGAGATGCAAATTTTTAGTTCTTGGCAAGAGTAGAGGAGTAACACATGGTTTAAAAGTCCATGTTTTCTGTCCTATGCTGAAGGATAAGAGAGATGCAGTCAGGTTTATTGCTGAGAGATGGAAGTTGGCTGTGAATTCTGCTGGTTGGGAGCCAAAGCGTTTTGTCATAGTTCATGTTACTCAGAAGTCAAAGGCTCCTCCCCGGGTGCTTGGGGTTAAGGGTACCACAACAATAAATGCACCCTTGCCTCTACAATTTGATCCATTAGTAGACATGGATCCTCGTCTTGTCGTCTCCTTTCCAGACTTACCAAGAGAAGGCGATATAAGTGCTTTAGTATTGAGGTTTGGCGGTGAATGTGAACTTGTTTGGTTGAATGATAAAAATGCATTGGCTGTTTTCCATGATCCTAGCCGAGCTGCAACTGCGATGAGGAGGTTGGATAATGGAACAGCTTATCATGGGGCTGTGGTGGCTGTACCAGTCGCTGGGGCATCAGCAACATCGGCCACTACTAATGCATGGGGAGGTGCTGGGACTGTGAAAGAAGGAGGAGCGCTGGCAGCATTGAAGGGGAATTCATGGAAAAAGGCAGTGGTTCAAGAGCCTGGGTGGAGAGAAGATTCTTGGGGTGATGAAGAGTGGACTGCTGGTTATGCTAATCTCCAGCCTTCTGCCTGGACGAGAGAAACACCTAAAGTCCCAATCACTGCGTCATCGAATCGGTGGAGTGTCTTAGACCAAGAATCATTTTCAAGCTCAGCTGCTGCAACCATTAGAACTGAAGTTTCTCGGAAACACTCAGCAACTTCATCTTCTGTCCCAAAGCTGGAATCTGATTCCGGTGGTTCTGTTCCAGGACAGCGTCAAGGAAACGCTAATGCAACAGAAGTTTCTGAAGTAGTAGATGATTGGGAGAAAGCTTATGAATGA 3783 0.4552 MIHLYFLQVHYTWEKNKRGILTSSFTLCLFNPGRISYDRIKDKTTVNNNITPEVREFTLKEKRKTMDRQNFKRDQRGNRMLERTAKMDFQCGTEEEKNEEECSEVVTTNGVGACILXLIAYVSFSLLSLSLLEFRIRKSHFTSVLAEPSFVCRTLHTMSLQVRQERRDRSRVPAQGSRQEWVPRASVAPTTLNSPPSNYPMDQNGNAGSSNNDVAPPANRHRSSHGSRSHISRPMNHRREREKGRNENQVVQRARDSNLPQLLQEILDKLMKGTVECMICYDIVCRSAPIWSCSSCYSIFHLNCVKKWARAPTSVDVSAEKNQGFNWRCPGCQSVQLTSSREIRYVCFCGKRPDPPSDLYLTPHSCGEPCGKPLERELLVNGGRGSKEDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKTITTRCSDRSSVLTCGQHCEKLLECGRHRCERICHVGPCDPCQVLIDASCFCNKKEEVILCGDMAVKGEIEAEGGVFSCGSNCGKKLSCGNHVCNEICHPGNCGECEFLPSQIKTCCCGKTKLEGERQSCLDPIPTCSQVCDKPLPCGLHHCREACHPGDCSPCLVLVSQKCRCGSTSRTVECYKAMKENESFTCERSCGWKKNCGRHRCSERCCPRSNPNNCLNGEWDPHFCTMPCGKKLRCGQHACEALCHSGHCPSCLETIFTDLTCACGRTSIPPPLPCGTPSPSCQLPCSVPQPCGHSASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRRCGLHACGRTCHSPPCDPSGCDQGLRASCGQTCGAPRRDCRHTCTAPCHPSAPCPDIRCEFSVTITCSCGRITANVPCGAGGCSGNYNVDSIHEASIIQKLPVLLQPVENSKSIPLGQRKLTCDDECAKLERKKVLADAFDVTTPNLDSLHFGENSTTTELLSDMLRRDPKWVLSVEERCKFLVLGKSRGVTHGLKVHVFCPMLKDKRDAVRFIAERWKLAVNSAGWEPKRFVIVHVTQKSKAPPRVLGVKGTTTINAPLPLQFDPLVDMDPRLVVSFPDLPREGDISALVLRFGGECELVWLNDKNALAVFHDPSRAATAMRRLDNGTAYHGAVVAVPVAGASATSATTNAWGGAGTVKEGGALAALKGNSWKKAVVQEPGWREDSWGDEEWTAGYANLQPSAWTRETPKVPITASSNRWSVLDQESFSSSAAATIRTEVSRKHSATSSSVPKLESDSGGSVPGQRQGNANATEVSEVVDDWEKAYE 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1738 1260 CDD NF-X1-zinc-finger 764 821 - -
Lele08g1738 1260 Pfam NF-X1 type zinc finger 626 637 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 Pfam NF-X1 type zinc finger 393 408 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 Pfam NF-X1 type zinc finger 664 681 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 Pfam NF-X1 type zinc finger 805 830 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 Pfam NF-X1 type zinc finger 721 738 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 Pfam NF-X1 type zinc finger 446 464 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 Pfam NF-X1 type zinc finger 774 790 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 Pfam NF-X1 type zinc finger 510 527 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 Pfam NF-X1 type zinc finger 568 585 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 99 1163 IPR034078 GO:0003700
Lele08g1738 1260 ProSiteProfiles Zinc finger RING-type profile. 277 333 IPR001841 -
Lele08g1738 1260 SMART znfxneu3 626 656 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 SMART znfxneu3 510 529 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 SMART znfxneu3 721 739 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 SMART znfxneu3 664 683 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 SMART znfxneu3 446 465 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 SMART znfxneu3 774 795 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 SMART znfxneu3 812 833 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 SMART znfxneu3 391 409 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 SMART znfxneu3 568 587 IPR000967 GO:0005634|GO:0008270
Lele08g1738 1260 MobiDBLite consensus disorder prediction 1212 1247 - -
Lele08g1738 1260 MobiDBLite consensus disorder prediction 233 250 - -
Lele08g1738 1260 CDD NF-X1-zinc-finger 801 852 - -
Lele08g1738 1260 CDD RING-CH-C4HC3_NFX1 276 333 - -
Lele08g1738 1260 MobiDBLite consensus disorder prediction 1212 1260 - -
Lele08g1738 1260 CDD NF-X1-zinc-finger 711 759 - -
Lele08g1738 1260 MobiDBLite consensus disorder prediction 184 218 - -
Lele08g1738 1260 CDD NF-X1-zinc-finger 558 606 - -
Lele08g1738 1260 CDD NF-X1-zinc-finger 366 429 - -
Lele08g1738 1260 SUPERFAMILY RING/U-box 269 336 - -
Lele08g1738 1260 MobiDBLite consensus disorder prediction 164 253 - -
Lele08g1738 1260 CDD NF-X1-zinc-finger 500 545 - -
Lele08g1738 1260 CDD NF-X1-zinc-finger 654 706 - -
Lele08g1738 1260 CDD NF-X1-zinc-finger 436 484 - -
Lele08g1738 1260 ProSiteProfiles Zinc finger PHD-type profile. 274 335 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1738 Lele-ChrLele08 11830299 11838015 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lele08g1738 zf-NF-X1 1.2e+02 No_clan