Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1727 ATGCAGTGGTCGTTTTCAAACAAGGTTTCTGCTGTTCCTCAATTGTTGTCCTTTAACACTTCTCCGGAAGCTAGGACAAGAAAGACCACGTCATCGACTGATGCTTTTGACTCTAATCAGAAACCATTCCTGGGTGTGATCCAGAAAAGTTTGAGCATGGGAAAACTAGTAGGAAATGAACGTGGAATGACAGTATACCCTATGCAACAAGTTGATAAGCTCTCAGGCTACCCTCAAGAAGCCAGCACATTTTCAGTCTCCAACCAATTAAATCAGAGGAGTCATGTTCTCCAATCTCCTGTAAGTACCAATGTTCAGAACATGGTCAATTCTTCCATAAAACCACACCCTCAAGCAGGAGTCCCTCTGATTGCCCCTGTATCTGTTCTTCCATCAAACGTTTCCGTTGTTGGCACCACTGACTTAAGGAACTCGTCGAAACCCTCTTGCAAACCTACTCAGCTGACCATTTTCTATCATGGTTCAGTGTGTGTTTATGAAGACATATCTCCTGAGAAGGCCCAGGCTATTATGTTATTGGCTGGAAATGGGAGTACTCCAAATCAAAACAAGTCAGTGTCAACAGGTCCAGTGCAAACACCAAACTCCAAGCCACCTAAAGATGATGGGTTTATTGTCGATCAAAGACCATACTGTTTACCTATACGAGATACAAACCCTGGATTTCTAAGTGCTTCAGGCGCTTTCGGCGTGCGAAGCAGTAAAGCAGTGGTGGTCTGGTCTTGGATAGAGATAGAAAATCATCAATCGATGGATGATGCCAAAGTCGCAGCGCTAAAGCAATTTATTGATGGGTGCAAGTCAAATCCTTCACTTCTTCACAACCCATCTCTTGCATTCTTCAAGTCTTATCTTTTCAGCTTAGGTGCTCAGCTACCTCCAGAACCGAAAACGGAGAAAGTTGCCGAGAACATGTCAGAGCGTCCTGATGCTAAAGGAGCTGATTTATCTAGAGAAGATGAAGATGAAATTGTAGAATCTGATATTGAATTGGATAATACTGATGTTGTTGAACCTGATAATGACCCTCCGCAGAAGATGGGAGATTCTTCAGCTGAGGTGACAGAAGATCAGCGGGATGCTGCACAAGTTGCAAAGTCTAAGGCCATGGATTCTATTTCAGAAGGGAAGTTGGAGGATGCGGTGGATCAACTAACGGAAGCCATTGTCTTGAATCCCCATTCAGCAATACTCTATGCTACCAGAGCTAGTGTCTTTATCAAGTTGAAGAAACCAAATGGTGCAATTCGTGATGCTGATACTGCCTTGCAGATTAATCCTGACTCAGCTAAAGGATACAAAATAAGGGGAATGGCAAGGGCTATGTTGGGATTATGGGAGGAAGCAGCTGGTGATCTTCATGTGGCTTCTAAGTTAGATCATGATGAAGAAATTGGAATGGCACTTAAAAAAGTTGAACCTAATGCCCGGAAAATTGATGAGCATAGGAGAAAATATGAACGCTTACGCAAGCAAAGGGAGCAGAAGAGAGCTGAACTGAAGAAGAAACAACAATCAGAAGCTCAAGTTCAAGAATCATTATCTGCTTTAAAAGATGGACAAGTCATTGGTATCCATTCAGCTGGTGAACTGGACAAGTTGTTGAGTGCTGCTTCTAAGACATCTCGCCTGGCAGTCCTGTATTTTACTGCAACATGGTGCGGCCCCTGTCGTTTCATTGGGCCTCATTTTACAAGCTTGGCTGAGAAGTACCCAAAAGTTGTATTTTTGAAGGTTGACATAGATGAGGCAACTGATGCGGCTGCACGCTGGAATATTAGTAGTGTTCCTGCCTTTTTCTTTATTAAGAATAACAAAGAGGTTGACAGTGTGGTTGGGGCAGACAAAAGTGGACTTGAAAGGAAGATTGCGCAACATGCAGGCTCTTCTTAA 1914 0.4326 MQWSFSNKVSAVPQLLSFNTSPEARTRKTTSSTDAFDSNQKPFLGVIQKSLSMGKLVGNERGMTVYPMQQVDKLSGYPQEASTFSVSNQLNQRSHVLQSPVSTNVQNMVNSSIKPHPQAGVPLIAPVSVLPSNVSVVGTTDLRNSSKPSCKPTQLTIFYHGSVCVYEDISPEKAQAIMLLAGNGSTPNQNKSVSTGPVQTPNSKPPKDDGFIVDQRPYCLPIRDTNPGFLSASGAFGVRSSKAVVVWSWIEIENHQSMDDAKVAALKQFIDGCKSNPSLLHNPSLAFFKSYLFSLGAQLPPEPKTEKVAENMSERPDAKGADLSREDEDEIVESDIELDNTDVVEPDNDPPQKMGDSSAEVTEDQRDAAQVAKSKAMDSISEGKLEDAVDQLTEAIVLNPHSAILYATRASVFIKLKKPNGAIRDADTALQINPDSAKGYKIRGMARAMLGLWEEAAGDLHVASKLDHDEEIGMALKKVEPNARKIDEHRRKYERLRKQREQKRAELKKKQQSEAQVQESLSALKDGQVIGIHSAGELDKLLSAASKTSRLAVLYFTATWCGPCRFIGPHFTSLAEKYPKVVFLKVDIDEATDAAARWNISSVPAFFFIKNNKEVDSVVGADKSGLERKIAQHAGSS 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1727 637 MobiDBLite consensus disorder prediction 327 344 - -
Lele08g1727 637 Gene3D - 256 301 - -
Lele08g1727 637 SUPERFAMILY TPR-like 363 471 IPR011990 GO:0005515
Lele08g1727 637 MobiDBLite consensus disorder prediction 303 364 - -
Lele08g1727 637 Gene3D Glutaredoxin 504 636 - -
Lele08g1727 637 MobiDBLite consensus disorder prediction 307 326 - -
Lele08g1727 637 FunFam TPR repeat-containing thioredoxin TDX 504 636 - -
Lele08g1727 637 Gene3D Tetratricopeptide repeat domain 330 503 IPR011990 GO:0005515
Lele08g1727 637 CDD TRX_family 537 631 - -
Lele08g1727 637 SMART tpr_5 437 470 IPR019734 GO:0005515
Lele08g1727 637 SMART tpr_5 403 436 IPR019734 GO:0005515
Lele08g1727 637 SMART tpr_5 369 402 IPR019734 GO:0005515
Lele08g1727 637 Coils Coil 486 516 - -
Lele08g1727 637 SUPERFAMILY Thioredoxin-like 477 633 IPR036249 -
Lele08g1727 637 PANTHER HSC70-INTERACTING PROTEIN 258 635 - -
Lele08g1727 637 Pfam tify domain 151 182 IPR010399 -
Lele08g1727 637 CDD Hip_N 260 300 IPR034649 GO:0046983
Lele08g1727 637 ProSitePatterns Thioredoxin family active site. 553 571 IPR017937 -
Lele08g1727 637 MobiDBLite consensus disorder prediction 185 202 - -
Lele08g1727 637 FunFam FAM10 family protein 330 503 - -
Lele08g1727 637 Pfam Thioredoxin 546 631 IPR013766 -
Lele08g1727 637 ProSiteProfiles Thioredoxin domain profile. 510 635 IPR013766 -
Lele08g1727 637 MobiDBLite consensus disorder prediction 185 210 - -
Lele08g1727 637 Pfam Hsp70-interacting protein N N-terminal domain 259 300 IPR034649 GO:0046983
Lele08g1727 637 ProSiteProfiles Tify domain profile. 148 183 IPR010399 -
Lele08g1727 637 SMART tify_2 148 183 IPR010399 -
Lele08g1727 637 FunFam Hsc70-interacting protein-like protein 258 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1727 Lele-ChrLele08 11716854 11727956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1727 1 186 Tify Gene Family AT3G17860 43.069 2.60e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lele08g1727 Thioredoxin 1.9e-22 CL0172