Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1698 ATGGACCCTTCCTCGATCCCTCCTCCGTCCTCCTTTCCGGCTCCAATCTCTCTCTTCCCCGTCAACTATGGTGGTATCGCTGCATCCAACACCAACACCACCGCAGCCGCCGTCGCTAATTCGGCTCCGGCTACTGCTCCTTCTGATGCAGATTCCACCCAGCCTGCTGCTCCCACTGCGAACCACCCTCCTTATTCTGAGATGATTTATGCAGCAATTGAGGCGCTGAAGGAGAAAAAAGGGTCTAGCAAGAGGGCTATTGCGAAATACATAGAGACCGCTTATCCTAACCTTCCACCGACTCACCCTGCTTTGTTGACCCACCACCTTCAGCGCTTAAAGAACAATGGACTCCTTGTTATGGTCAAAAAATCTTATAAACTTCCTAGATCTGATGGTTCTCCGTCTACTGCGCAGAGAGGACGTGGCAGACCACCGAAGCTCAAGCCTCAGCCGCAGGTTCAGCCCCAGCTTCAGGCTTCGGGTCAGCCAGAACAGCAGCCGGTGAGCATGCCCAACGCGCCGCAAAATCTGCAAAATGCTGAGCCTGTTTGGGTTGCCCTAGGGCTCGCTGATGAGCCCACGGAAGTGAAGAAACGAGGCCCAGGCCGTCCTCGCAAGAGTGACGTAGTAGCAGAGGGGGTTGCTCTACCTGGAACGGCTGCTCGGAGAGGTCGTCCACCTGGAACCGGGAGATCCAGGTTGACAAAGAGGCCCGGGCGTCTTCCGAAGCCGAAATCTGTTATGGCTATCTCTAATGGGATGAAGCGTCGACCTGGTAGGCCGCCAAAAATCCAATCTAAACCCACGGCGATTCCTTTTGCCGCTCCAGCCTCTGCTCCCCAAGGGCCACCTACTGCACTCCCCGATCAGGAAGGAACTGTACCGGATGCTAATGCACCAATTCTCGCTCCTAGGCGTAGAGGGCGTCCGAAGAAGTATGGAGTGCAAGCGCCCGGAGTTGCTTCTCAAACTATTGGCCGGGGTCGAGGCCGTGGACGGGGACGTGGGCGCGGTGCCTATCGTAGCTCTACTGGAAGACCCGTTGGCCGGCCTAGGAAGGAAACAGCTCCTGATGCTGCTGCACAAAAAGCTGGTAATGAAGAGTTCAAGAGGAAACTTGAATATTTTCAATCCAAGGTGAAGGAGTCTCTTGCTGTGATTAAGCCTCATTTCAATCATGAAAGCCCAGTCACTGCAATTGCGGCAATCCAAGATTTAGAAATTCTGGCAACCCTGGACCTTAATGCACCGTTGAATGATGATACACAACCAGCACAGCAACTTCCTCAGGTTCAAGTGCAGCCGCTGCAGCAGCAAACGGAACAGCCGGAGTTTCAACAGCAGCAGCAAATGCCACCACCACAGATGTATCGGCATCAGTTGCCACAGTCTCATGTTTTTCCTCAGGCATATCAGCAGCCACAGAGTTTCCAACAGCAACTGCCACAGCCTCAGCTTTATCAACAGCAAATGCAGCATGTACCGACGCAGTCACAGCAGCCTCAATTGTTTCACCCACATGCATGA 1530 0.5379 MDPSSIPPPSSFPAPISLFPVNYGGIAASNTNTTAAAVANSAPATAPSDADSTQPAAPTANHPPYSEMIYAAIEALKEKKGSSKRAIAKYIETAYPNLPPTHPALLTHHLQRLKNNGLLVMVKKSYKLPRSDGSPSTAQRGRGRPPKLKPQPQVQPQLQASGQPEQQPVSMPNAPQNLQNAEPVWVALGLADEPTEVKKRGPGRPRKSDVVAEGVALPGTAARRGRPPGTGRSRLTKRPGRLPKPKSVMAISNGMKRRPGRPPKIQSKPTAIPFAAPASAPQGPPTALPDQEGTVPDANAPILAPRRRGRPKKYGVQAPGVASQTIGRGRGRGRGRGRGAYRSSTGRPVGRPRKETAPDAAAQKAGNEEFKRKLEYFQSKVKESLAVIKPHFNHESPVTAIAAIQDLEILATLDLNAPLNDDTQPAQQLPQVQVQPLQQQTEQPEFQQQQQMPPPQMYRHQLPQSHVFPQAYQQPQSFQQQLPQPQLYQQQMQHVPTQSQQPQLFHPHA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1698 509 MobiDBLite consensus disorder prediction 466 509 - -
Lele08g1698 509 PRINTS Histone H5 signature 195 214 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele08g1698 509 PRINTS Histone H5 signature 48 69 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele08g1698 509 PRINTS Histone H5 signature 75 92 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lele08g1698 509 PRINTS AT-hook-like domain signature 344 354 IPR017956 GO:0003677
Lele08g1698 509 PRINTS AT-hook-like domain signature 303 314 IPR017956 GO:0003677
Lele08g1698 509 PRINTS AT-hook-like domain signature 139 149 IPR017956 GO:0003677
Lele08g1698 509 Gene3D - 58 139 IPR036388 -
Lele08g1698 509 MobiDBLite consensus disorder prediction 193 207 - -
Lele08g1698 509 PANTHER HISTONE H1 40 266 - -
Lele08g1698 509 MobiDBLite consensus disorder prediction 430 458 - -
Lele08g1698 509 SUPERFAMILY "Winged helix" DNA-binding domain 58 135 IPR036390 -
Lele08g1698 509 Pfam linker histone H1 and H5 family 62 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele08g1698 509 FunFam Histone H1.2 58 138 - -
Lele08g1698 509 MobiDBLite consensus disorder prediction 430 509 - -
Lele08g1698 509 SMART AT_hook_2 199 211 IPR017956 GO:0003677
Lele08g1698 509 SMART AT_hook_2 221 233 IPR017956 GO:0003677
Lele08g1698 509 SMART AT_hook_2 305 317 IPR017956 GO:0003677
Lele08g1698 509 SMART AT_hook_2 346 358 IPR017956 GO:0003677
Lele08g1698 509 SMART AT_hook_2 256 268 IPR017956 GO:0003677
Lele08g1698 509 SMART AT_hook_2 139 151 IPR017956 GO:0003677
Lele08g1698 509 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 61 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele08g1698 509 MobiDBLite consensus disorder prediction 126 176 - -
Lele08g1698 509 SMART h15plus2 59 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele08g1698 509 MobiDBLite consensus disorder prediction 39 60 - -
Lele08g1698 509 MobiDBLite consensus disorder prediction 193 366 - -
Lele08g1698 509 MobiDBLite consensus disorder prediction 39 63 - -
Lele08g1698 509 CDD H15 59 138 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele08g1698 509 MobiDBLite consensus disorder prediction 153 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1698 Lele-ChrLele08 11496283 11499891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1698 35 143 Single Myb Histone (SMH) Gene Family AT1G49950 33.043 2.67e-07 50.4