Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1634 ATGGCGACGCCGTTGCCTGGACAACAGCACTTGGACGGAGGTGGAGGAGTGGCCGTGCTCTCCAATTCTGTGAACAAGGCCGATTCTTCCTCGTCCACATCCAATGGTGGCTTGAAGTGCTCCGAATTGGAGTCGCCTATTCTAATTTTCTTATTCTTCCACAAAGCGATTCGGAATGAGCTCGATGCCCTCCACCGATTAGCAATGGCATTTGCCACCGGTAATCGCTCTGATATTCAGCCGCTGTGCGAACGCTATCATTTCCTCAGATCAATTTACAGGCACCATTCCAATGCCGAAGATGAGGTGATTTTTCCAGCTCTTGATATACGTGTGAAAAATGTAGCACAGACATATTCCCTCGAACACAAGGGTGAAAGTAATCTTTTTGATCATCTATTTGAGCTATTAAATTCTACCACCCATAATAATGAAAGTTTCTTGAGGGAGTTAGCATTCTGTACGGGAGCCCTGCAGACATCAGTTAGTCAACACATGGCTAAGGAAGAGGAGCAGGTGTTTCCTCTGCTCATTGAAAAGTTCTCTCTTGAGGAGCAGGCATCTTTAGTTTGGCAGTTTCTATGCAGTATTCCTGTGAATATGATGGCAGTATTTCTTCCATGGCTTTCAGCGTCTATATCGCCTGATGAATCTCAGGATCTGCGGAAGTGCTTAGGCAAAATAGTGCCACAAGAAAAGCTTCTTCAGAAGGTTATTTTTACTTGGATGGAAGGGAGAAGTGGTGCCCTCGCAGTTGAAAATTGTGTTGATCATTCTCAGTTTCAAGGTTCATGTTGCCCATTAACCCACCGGATTGAGAAAGTAAACTGTGCGTGTGAGTTCACAACAACTGGGAAAAGGAAATATTCTGAATCTGGTCTGGATGCTTCTGATATTAGCGGAACACATCCTATAGATGAAATATTACTGTGGCATAATGCAATAAAAAAAGAGTTAAGCGAGATAGTGGCGGAGACCAGGAAGATACAGCTCTGTGGAGATTTTACTAATCTATCAGCTTTTAATGAAAGATTGCAATTTATCTCTGAAGTTTGCACATTTCACAGTATTGCTGAGGACAGGGTTATATTCCCAGCTGTAGATGGTGAATTTTCTTTCTTGCAGGAGCATGCCGAAGAAGAAAGCCAATTTAATGACTTTCGGAGTTTGATTGAAGCTATTCAGAATGAAGAAGCAACATCTAATTCAGAAGTTGAATTTTATTCCAAGTTGTGCTCACATGCCGATCAGATCATGGAAACTATACAAAGACATTTCCATAATGAGGAAGTTCAAGTTCTTCCACTTGCTCGGAAGCACTTTAGCTTTGGAAGGCAACGTGAACTTCTATATCAAAGTTTGTGCATGATGCCTTTGAAATTGATTGAACGTGTCCTGCCATGGCTGGTAGGATCGTTAACCCAAGATCAAGTGAAGATGCTTTTAAAAAATATGCAATTGGCAGCCCCAGCAACAGATTCTGCTCTAGTTACACTCTTCTGCGGTTGGGCTTGCAAGGCTTGTAATGAGGGGTTCTGTTTGTCTTCAAGTGCATTGGGTTGCTGTCCTGCTCAAAGACTTACTGATATTGAAGAAAATTTTTTCCAGTCATCCTGTCCTTGTGGCACTTCAGCATCATCTGTTAGAGATTACTCATTGCTAATTGAGCTAGATGAGAACAAAAGACCAGTTAAGCGGACCATATTGGAGTTATGCAAGAACAGAGATGTCTTTGAAACTTCAGAGTCTGAAAGTATTGAGAAACAATGTTGTGGTGCAAGGTCTTGTTGTGTGCCAGGTTTAGGTGTAAGCAGTAATAATTTGGGGCAAAGCTCTCTTTCTACTATCAAGTCCTTACGCTCCTTGTCTTTCAGCTCTTCTGCTCCATCTATAAATTCCAGTCTTTTCATATGGGAAACAGATAATAACTCGTGTGACAACTCTGCAGAAAGACCCATTGATACTATATTTAAATTTCACAAAGCTATACAGAAAGATTTGGAGTATTTAGATATTGAATCTGGAAAGCTTAGTCATGGTGATGAGACAACTCTTCGGCAATTTACTGGAAGATTTCGTCTTTTGTGGGGTCTATATAGAGCTCACAGTAATGCTGAGGATGATATAGTATTTCCAGCACTGGAATCCAAAGAATCCCTTCATAATGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCCCATGTTCTTTCTGAGCTTTCTGTCCTTCATGAAGACTTTCAGATGACCAGTATGTCTAATAAAAGTAATTCTGAAACTTCTGATGTTAGTTTCAGAGATAATAACATAAAGTACAATGAGCTAGCAACTAAACTTCAAGGGATGTGCAAATCCATAAGAGTGACACTGGATCAGCATATTTTTAGGGAAGAGCTTGAGCTCTGGCCATTGTTTGGGAGACATTTTACTGTGGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGGACTACAGGTGCAGAAGTTCTACAATCAATGCTACCATGGGTAACTTCTGCACTTTCTGAGGATGAACAGAACAAAATGATGGATACATGGAAACAGGCAACAAAAAATACTATGTTCAATGAATGGCTTAATGACTGCTGGAAAGAAAATCCAGCAGCTATATTGCAGAAAGAAACACCAGAGCAAACTTCTCAAAAAGGTGCTGAACATCAGGAAAGCGTGGACCTGAATGATCAGATGTTTAAGCCAGGATGGAAAGACATATTCCGGATGAATCAGAATGAGCTTGAGTCAGAGATCCGGAAGGTTTATCAAGACTCAACTCTTGATCCTAGAAGAAAAGCATATCTCGTGCAGAATCTAATGACTAGTCGATGGATAGCTGCACAGCAGAAGTTACCTAAAGCTACAGATGGGGATTCTAAAGATGGAGAAAGAATTGAAGGACGCTCAGCATCATTTCAGGACCAGGAGAAACAGATATTCGGGTGTGAACACTATAAAAGAAACTGCAAACTTAGAGCTGCTTGCTGTGGCAAGTTGTTTACATGTAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACTTCAGAAATGATGTGTATGCGTTGCTTGAATATACAGCCAGTTGGGCCGATATGCATGACACCTTCATGTTATGGATTTTCAATGGCAAAATACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATATATATCACTGTCCATTTTGCAATTTGTGCCGTGTGGGGAGAGGGCTTGGGATTGATTATTTTCATTGTATGACATGCAACTGCTGCTTGGGGATAAAATCAGCATCTCACAAGTGCCTGGAGAAAGGCTTAGAAATGAATTGCCCAATATGCTGTGACTTCTTATTTACATCAAGTGCTACAGTCAGAGCTCTACCTTGTGGCCATTATATGCATTCAGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAATCATTGGGTGATATGGCGGTTTACTTTGGCATGCTTGATGCTTTATTGGCTGCTGAGGAGCTCCCAGAAGAGTACAGGGACCGTTATCAGGATATACTCTGCAATGACTGCCAACGAAAGGTGTGTTCTCCCTTCCACTGGTTGTATCACAAATGTGAATTTTGTGGCTCGTACAATACCCGCGTGATCAAGTCGGAGCCATTAAATTCTCGCTGCTCTTAG 3723 0.4118 MATPLPGQQHLDGGGGVAVLSNSVNKADSSSSTSNGGLKCSELESPILIFLFFHKAIRNELDALHRLAMAFATGNRSDIQPLCERYHFLRSIYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSTTHNNESFLRELAFCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAVFLPWLSASISPDESQDLRKCLGKIVPQEKLLQKVIFTWMEGRSGALAVENCVDHSQFQGSCCPLTHRIEKVNCACEFTTTGKRKYSESGLDASDISGTHPIDEILLWHNAIKKELSEIVAETRKIQLCGDFTNLSAFNERLQFISEVCTFHSIAEDRVIFPAVDGEFSFLQEHAEEESQFNDFRSLIEAIQNEEATSNSEVEFYSKLCSHADQIMETIQRHFHNEEVQVLPLARKHFSFGRQRELLYQSLCMMPLKLIERVLPWLVGSLTQDQVKMLLKNMQLAAPATDSALVTLFCGWACKACNEGFCLSSSALGCCPAQRLTDIEENFFQSSCPCGTSASSVRDYSLLIELDENKRPVKRTILELCKNRDVFETSESESIEKQCCGARSCCVPGLGVSSNNLGQSSLSTIKSLRSLSFSSSAPSINSSLFIWETDNNSCDNSAERPIDTIFKFHKAIQKDLEYLDIESGKLSHGDETTLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKESLHNVSHSYMLDHKQEEKLFEDISHVLSELSVLHEDFQMTSMSNKSNSETSDVSFRDNNIKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALSEDEQNKMMDTWKQATKNTMFNEWLNDCWKENPAAILQKETPEQTSQKGAEHQESVDLNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKATDGDSKDGERIEGRSASFQDQEKQIFGCEHYKRNCKLRAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMRCLNIQPVGPICMTPSCYGFSMAKYYCNICKFFDDERNIYHCPFCNLCRVGRGLGIDYFHCMTCNCCLGIKSASHKCLEKGLEMNCPICCDFLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRYQDILCNDCQRKVCSPFHWLYHKCEFCGSYNTRVIKSEPLNSRCS 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1634 1240 Gene3D nmb1532 protein domain like 645 888 - -
Lele08g1634 1240 MobiDBLite consensus disorder prediction 963 983 - -
Lele08g1634 1240 Pfam Zinc-ribbon 1171 1228 IPR039512 -
Lele08g1634 1240 CDD RING-H2_Pirh2 1123 1166 - -
Lele08g1634 1240 Pfam Hemerythrin HHE cation binding domain 51 177 IPR012312 -
Lele08g1634 1240 Pfam Hemerythrin HHE cation binding domain 652 812 IPR012312 -
Lele08g1634 1240 Pfam Hemerythrin HHE cation binding domain 303 437 IPR012312 -
Lele08g1634 1240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1120 1168 IPR013083 -
Lele08g1634 1240 ProSiteProfiles Zinc finger CHY-type profile. 988 1057 IPR008913 GO:0008270
Lele08g1634 1240 Gene3D nmb1532 protein domain like 306 453 - -
Lele08g1634 1240 Gene3D nmb1532 protein domain like 44 195 - -
Lele08g1634 1240 ProSiteProfiles Zinc finger RING-type profile. 1124 1166 IPR001841 -
Lele08g1634 1240 FunFam Zinc finger protein-related isoform 1 1119 1168 - -
Lele08g1634 1240 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 695 1233 - -
Lele08g1634 1240 MobiDBLite consensus disorder prediction 967 983 - -
Lele08g1634 1240 Gene3D - 1195 1237 - -
Lele08g1634 1240 SUPERFAMILY RING/U-box 1121 1176 - -
Lele08g1634 1240 Pfam CHY zinc finger 995 1070 IPR008913 GO:0008270
Lele08g1634 1240 SMART ring_2 1124 1165 IPR001841 -
Lele08g1634 1240 CDD Hr-like 306 435 - -
Lele08g1634 1240 CDD Hr-like 49 175 - -
Lele08g1634 1240 CDD Hr-like 654 811 - -
Lele08g1634 1240 SUPERFAMILY CHY zinc finger-like 988 1051 IPR037274 GO:0008270
Lele08g1634 1240 SUPERFAMILY Zinc hairpin stack 1061 1117 IPR037275 -
Lele08g1634 1240 ProSiteProfiles Zinc finger CTCHY-type profile. 1060 1123 IPR017921 -
Lele08g1634 1240 FunFam Zinc finger protein BRUTUS 647 876 - -
Lele08g1634 1240 Pfam Ring finger domain 1123 1165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1634 Lele-ChrLele08 10908533 10916686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1634 1 1240 C2H2 Transcription Factor Family AT3G18290 67.143 0.0 1695