Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1629 ATGTCTACTTCAAAGAGCTGCGAGAGCAGTTGTAGTGAAGATGATAGTGAACTTAGGAGAGGACCTTGGACTCTTGAAGAAGATACGCTGTTAACTCAGTACATCTCTGCTCATGGGGAAGGACGATGGAATTTGCTGGCAAAACGTTCAGGGTTGAAGAGAACAGGAAAGAGTTGCAGATTAAGATGGCTTAATTATCTGAATCCACTAGTAAAGAGAGGAAATTTATCCCCAAAAGAGCAGATTTTGATCCTTGAACTCCACTCAAAGTGGGGCAACAGGTGGTCGAAGATTGCACAACATCTTCCAGGGAGGACAGACAATGAAATCAAGAACTACTGGAGAACTCGGATTCAGAAACAAGCAAGACACTTGAATATTGACACAGACAGCACAGAGTTTAAAGAAATCGTCAGACGATTTTGGATGCCAAGATTGCTGCAGAAAGCAAGAGAAACAGCTTCTCCTCCTCTTCCTCCTGCCATGTCATCAATCCAAAACCAAACGATTCCTAATTTGCCTACTGACAGTGCTTCTCAGTGTTCACAAATAGTGACAGTAGTACCAACAACAACACAGATTTCTTGGCAGGGACCTAATTGTATGACGATGAATGAAACAGTAGTTCAAAACAGTTCATGCGTGTCCTCTGCTTCTTCCTCGGAATCATCGAACATCCCAGAAGTGTCTCAGTTTCAAGCCTTAGATAACAGTGACATGAGCTCCTTTATGTATGATAATGGCTACTATGTTAATAACAATACTTACAACATGGAAACATTCAATCTTGGAACAACAGTGACGGCTGAGGCCATGGCAGGAAACTGGATGAACATGAACAGTGATGATGTTGCATGCAGCATGTGGGGCATGGATGAACTGTGGCAGTTCAAAAACTTGCAAGAATAA 909 0.4235 MSTSKSCESSCSEDDSELRRGPWTLEEDTLLTQYISAHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLNPLVKRGNLSPKEQILILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLNIDTDSTEFKEIVRRFWMPRLLQKARETASPPLPPAMSSIQNQTIPNLPTDSASQCSQIVTVVPTTTQISWQGPNCMTMNETVVQNSSCVSSASSSESSNIPEVSQFQALDNSDMSSFMYDNGYYVNNNTYNMETFNLGTTVTAEAMAGNWMNMNSDDVACSMWGMDELWQFKNLQE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1629 302 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 230 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lele08g1629 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 71 IPR017930 -
Lele08g1629 302 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Lele08g1629 302 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Lele08g1629 302 CDD SANT 77 116 IPR001005 -
Lele08g1629 302 CDD SANT 22 67 IPR001005 -
Lele08g1629 302 FunFam MYB transcription factor 76 118 - -
Lele08g1629 302 Gene3D - 77 119 - -
Lele08g1629 302 Gene3D - 20 72 - -
Lele08g1629 302 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Lele08g1629 302 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Lele08g1629 302 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Lele08g1629 302 SMART sant 72 120 IPR001005 -
Lele08g1629 302 SMART sant 19 69 IPR001005 -
Lele08g1629 302 FunFam Myb transcription factor 20 72 - -
Lele08g1629 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 122 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1629 Lele-ChrLele08 10880996 10882092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1629 15 298 MYB Transcription Factor Family AT1G68320 45.205 2.94e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele08g1629 Myb_DNA-binding 2e-15 CL0123