Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1612 ATGAAAGGGGCAAATGCATTGGGAGCTAAAACTGCGAGAGCTTGTGATAGCTGCCTTCGCCGACGAGCACGGTGGTTTTGCGCCGCCGATGACGCTTTCTTATGCCATGGCTGTGACAATCTGGTTCACTCTGCGAATCAGTTAGCCAGCAGACATGAAAGGGTTCGTCTTCAAACTGCTTCATCCTCCAAAAAGGGTACCTCCTCCTCCTCCTCGCAAGTATGGTACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCATAACAATAGCAAGCAGTTATCGTTATTGGCTCAGAAAAAATCCAAACATGAGGAAGAAGAGGAGGACGCGATTTTTAATAGTAGTCTTCCCGTCGTGCCAGAGCTCGGAAGCGAAGAAGTAGGTGGTGGGCTGGACGAGAGCGATGAGCGGTTGCTTTGCCGGGTTCCGGAGTTTGATCCGTTTGAAGATGAGCTTTGCAATATTTACAGTGAGGTTGGGGATGATCATAGTTTGGACGTGGTGATGAAGAAAGATGATGATGATGTGAATGATGAAGGAATGTGTTGTGACTTAGACAATATTTCGGAGTTTCTTGCGTCGGATATGGCTCTTGCAGAGTTTGCTGCTGATGTTGAAAGCTTACTGGAAAGTGGGCTTGATGAATCTGCAGGAGCGTCAGAATTACTGTTGGATTGTAAACAAGAAGAAATGATGGAAGCATTGGAGGATACTTTTGTAGGGTCAACGACAGACAAAAATGATAATGCGATGGTAAAGATTAAGGATGAAGAACAAGTAATTGAAGCTAACATGGTTGTAGGCATGACAAGCGAGACCTTAAATTGGAACCCATCATCAGAAGAGGAAAAGAAGGTGGAGACAAAGATATTTTTGAGGTTAAACTACGAGGATGTCATAAGTGCTTGGGCAAGTCAAGGTTGTCCCTGGACAACAGGAAACCCACCTCAGTTCAACTCTATTGACTGCTGGCCACAGTGCTTGGGATCGAGTGGAGGAGATGTTCATCATCAGTGCTGTTATGGGGAAGTTGGTGGGGGCTTAAGGAGACATAGAGATGGGGGAAGAGAAGCGAGAGTGTCGAGGTACAGAGAGAAGAGGAGAACGCGTTTATTTGCGAAGAAGATAAGGTACGAGGTGAGGAAACTAAACGCAGAAAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGATCAGGACGTCGTCCTTCGTTGGAACCACTACTGCTTTGCCTGCTGCTTCTCACTGA 1251 0.4628 MKGANALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASSSKKGTSSSSSQVWYSGFTRKARTPRHNNSKQLSLLAQKKSKHEEEEEDAIFNSSLPVVPELGSEEVGGGLDESDERLLCRVPEFDPFEDELCNIYSEVGDDHSLDVVMKKDDDDVNDEGMCCDLDNISEFLASDMALAEFAADVESLLESGLDESAGASELLLDCKQEEMMEALEDTFVGSTTDKNDNAMVKIKDEEQVIEANMVVGMTSETLNWNPSSEEEKKVETKIFLRLNYEDVISAWASQGCPWTTGNPPQFNSIDCWPQCLGSSGGDVHHQCCYGEVGGGLRRHRDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKIRTSSFVGTTTALPAASH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1612 416 SMART bboxneu5 10 57 IPR000315 GO:0008270
Lele08g1612 416 MobiDBLite consensus disorder prediction 83 116 - -
Lele08g1612 416 Pfam CCT motif 357 398 IPR010402 GO:0005515
Lele08g1612 416 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Lele08g1612 416 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Lele08g1612 416 ProSiteProfiles CCT domain profile. 357 399 IPR010402 GO:0005515
Lele08g1612 416 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 399 - -
Lele08g1612 416 CDD Bbox1_BBX-like 14 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1612 Lele-ChrLele08 10740689 10742344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1612 4 398 C2C2-CO-like Transcription Factor Family AT1G25440 44.056 3.48e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele08g1612 zf-B_box 4.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1612 08 10740689 10742344 Lele08g1612 08 10740689 10742344 ECH
Lele05g1763 05 11670889 11672558 Lele08g1612 08 10740689 10742344 hybridization
Lele06g1620 06 10848903 10850587 Lele08g1612 08 10740689 10742344 hybridization