Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1588 ATGGATTTAGAAGAAAAGTTCCTTGCTAAAGTTTCCGGTCTTCAAAGCCTTTCTTCCAGCGTGCAAAGCACTCCGGAGAAAAATGGCCATTCAGATGATGCCTCAAGAAGTCCAGAACTCCTGCAGGAGTTCCTTAAATCTGGTCCAAAAAAGGAGCTTCTACGGACATGCTTTGATAAAGACAAAAAGATCACTTCAGCTAAAGGCAGGGTGACTGAAAATAAGTCAAGTAAGATAATCAAGAAACAGGACTCAAAAAAGGTTTCTAGCAGTAACCAGTCCTCTAAAAAGCAGCATAGAAAGGGAGAAAATCCTTCAAGACTCCTGCCAACGCCTGACCAGTCTTCGGATTTGGGGCATACAAACTCTTGGATCTGTAAAAATTCTGCTTGTAGAGCTGTTCTGTCTATAGACGACACATTTTGTAGAAGGTGCTCTTGCTGTATCTGTCATCATTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTCTGCACATCTGAATCTGCTCAGGGCGATTCCTGCGGGTTATCTTGCCATATTGAGTGCGCCATCCAACACGAAAAAGTGGGAGTTGTTGATCATGGGCAATTGATGCAACTAGATGGTGGCTATTGTTGTGCAACTTGTGGTAAAGTTTCAGGGATACTTGGATGTTGGAGAAAGCAGCTAAGTATAGCAAAAGATGCTCGGCGTGTAGATGTACTCTGTTATAGAATATATTTGAGCTACAGGCTTCTAGATGGGACTTCGAGGTTTAAAGAACTCCATGAGATTGTGCAAGAGGCGAAGGCTAAACTGGAAACAGAAGTTGGTCCAGTTAATGGTGTTTCTTCCAAGATGGCAAGGGGCATCGTCAGCAGACTCTCTATTGCCAGTGATGTGCAGAAATTGTGCTCCCTTGCTGTTGAGAAAGCTGACGAGTGGCTGGCCTCGGTTTCCAATGTAAATCCAGATTCCAGAGAGGGTTCGCTCCCTGCTGCCTGCAAGTTTGTTTTTGAAGAGGTGACAGCTTCCTCAGTCAAAATCATTTTGATTGAAATGTCTAATTCGTCTTCTGAGGACATCAAAGGTTTCAAGCTATGGTATTACAAGAGTGGGGAGGAATTGCACAGTAAAGATCCTGTTTGTGTTTTCCCGAAATCTCAGAGGAGGATTCTGATATCAAACCTCCAACCTTGCACAGAATATACATTTCGGATCGTATCTTACACAGATACATGGGATCGGGGTCATTCTGAGATCAAGTGTTTCACTAAGAGCATTGAAATAATTAGAAAAAATCCTTCTTCGCTAGCTGCTTTGAATCATAATAAAGAGGACGATAAAACTGGAGGCACTTCTTCCGACCCCAAAAGGGAGCCCAATCCAACAATGGCAGACTCTGGATTTAAGGTTCGAGACCTTGGAAAAGTTCTGCGCCTTGCTTGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTTTGCTGTGCCGATGTGAAAAATTGCTGTGGAGGAAGTGAAATGGTCAGGCCTAAATATTCAGAAGAGACATTGCCTAAAGTTTCAAGGGGTCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAATTAACACCACCTTTCGAGTCTTCTAGGGATGAGGATAACGGTTGCACCTTGCAGCAGGCTATCGGGGCAGATGACGATGCTGCTTCCCATGATATTGAGAAGATTGGTTTAGCAAGATCCCATGGCAGTGGCGACTCGCAAACCTGGGCCCACAGGCCAACCGGAGAAGTGCCAGCTGTCGACTCACGTGTAGATGCCACCGCATGCAGGAAAAGATTAGCAAGCACAAATGAAGAGACTCATGATTGTGACAGCACTTTGATAAATGGCTCTCCTTTGCGCATTTCTGATGGATGTTGTTCCCTGGATGAGAACTTCGAGTATTGCGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGCCACATTAAGCAGGAATTTCGGTTGAAATTACTAACATGGTTTAGTTTGAGGTCAACAGAGCAAGAACGTAGGGTGGTCAATACCTATATTCAAACTCTGATTGATGACCCAGGTAGTTTGGCTGGCCAACTTGTTGACTCCTTTTCTGATATTATATCTAACAAGAGGCCAAGAAATGGATTCTGCGGTAAGCTTTGGCATTAA 2157 0.4367 MDLEEKFLAKVSGLQSLSSSVQSTPEKNGHSDDASRSPELLQEFLKSGPKKELLRTCFDKDKKITSAKGRVTENKSSKIIKKQDSKKVSSSNQSSKKQHRKGENPSRLLPTPDQSSDLGHTNSWICKNSACRAVLSIDDTFCRRCSCCICHHFDDNKDPSLWLVCTSESAQGDSCGLSCHIECAIQHEKVGVVDHGQLMQLDGGYCCATCGKVSGILGCWRKQLSIAKDARRVDVLCYRIYLSYRLLDGTSRFKELHEIVQEAKAKLETEVGPVNGVSSKMARGIVSRLSIASDVQKLCSLAVEKADEWLASVSNVNPDSREGSLPAACKFVFEEVTASSVKIILIEMSNSSSEDIKGFKLWYYKSGEELHSKDPVCVFPKSQRRILISNLQPCTEYTFRIVSYTDTWDRGHSEIKCFTKSIEIIRKNPSSLAALNHNKEDDKTGGTSSDPKREPNPTMADSGFKVRDLGKVLRLAWAQEQGCFEGFCCADVKNCCGGSEMVRPKYSEETLPKVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAIGADDDAASHDIEKIGLARSHGSGDSQTWAHRPTGEVPAVDSRVDATACRKRLASTNEETHDCDSTLINGSPLRISDGCCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTYIQTLIDDPGSLAGQLVDSFSDIISNKRPRNGFCGKLWH 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1588 718 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 718 IPR044514 GO:0010048|GO:0040029
Lele08g1588 718 MobiDBLite consensus disorder prediction 11 40 - -
Lele08g1588 718 SUPERFAMILY Fibronectin type III 332 417 IPR036116 GO:0005515
Lele08g1588 718 MobiDBLite consensus disorder prediction 435 462 - -
Lele08g1588 718 CDD FN3 330 406 IPR003961 GO:0005515
Lele08g1588 718 MobiDBLite consensus disorder prediction 12 28 - -
Lele08g1588 718 MobiDBLite consensus disorder prediction 68 85 - -
Lele08g1588 718 ProSiteProfiles Fibronectin type-III domain profile. 325 424 IPR003961 GO:0005515
Lele08g1588 718 MobiDBLite consensus disorder prediction 68 116 - -
Lele08g1588 718 Pfam PHD - plant homeodomain finger protein 126 244 IPR032881 -
Lele08g1588 718 Gene3D Immunoglobulins 310 415 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1588 Lele-ChrLele08 10539892 10544944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1588 87 711 PHD Gene Family AT3G24440 47.426 0.0 530