Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1549 ATGTCTGTGCCACACGAGCAGGACTATGTATGCTTGACAGAGCTTCCTTCAATGGAAAAAGGCTTCGACAAGTTTTCTCAGAGAAGCAACAACAGTGGCTTGAACCTCAAGGACACTGAGCTACGACTTGGACTGCCTGGGTCCGAGTCACCGGAGAGGGACGGCGCCGGCGCCGGTAAGAGTGCGGTGGTCTGTGGGGCCAAGAGGGGTTTCTCAGATACCATTAACGGTGGTTCTGGAAAGTGGGCTCTGTCAGGGAATGGAGGATCTGAAGCGGGTTTGGGTAAAGATGGTGGCTTGTTCTCTCCCAGAGGTGGCTCCAACCCTTCCCTGGCCAAAGATAGCGTCCCAAACTCACCAAAGCCATTGTTGCATGAGAAGAAGCCCCAGATATCTGCTGCTCCTCCAAAGGAACAAGTTGTGGGGTGGCCACCAATAAGATCTTTCAGGAAGAACACGATGGCTTCAAGTCCTCAAAAGAACGGTGAAGATGATGCAGAAGCCAAGTCTGGATGTCTTTATGTAAAAGTAAGCATGGATGGTGCCCCTTACTTGAGGAAGGTGGATCTCAAAAACTTTGCCAGTTACCGCCAACTTTCTTCTGCACTTGAAAAGATGTTCAGATGCTTCACAATCAGTCAATGTGGATCTCACGGAATTTCGAGTCAGGATAATTTGAGTGAAAGTAGGTTGAAGGATCTGCTTCATGGTTCAGAATATGTGCTTACATATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTGCCCTGGGAGATGTTCACTGCCTCTTGCAAGAGATTGAGGATCATGAAGAGTTCTGAAGCAATTGGCCTAGCACCAAGAGCAATGGAAAAGTGCAAAAGCCGAAACTAG 879 0.4858 MSVPHEQDYVCLTELPSMEKGFDKFSQRSNNSGLNLKDTELRLGLPGSESPERDGAGAGKSAVVCGAKRGFSDTINGGSGKWALSGNGGSEAGLGKDGGLFSPRGGSNPSLAKDSVPNSPKPLLHEKKPQISAAPPKEQVVGWPPIRSFRKNTMASSPQKNGEDDAEAKSGCLYVKVSMDGAPYLRKVDLKNFASYRQLSSALEKMFRCFTISQCGSHGISSQDNLSESRLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTASCKRLRIMKSSEAIGLAPRAMEKCKSRN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1549 292 ProSiteProfiles PB1 domain profile. 172 274 IPR000270 GO:0005515
Lele08g1549 292 FunFam Auxin-responsive protein 167 284 - -
Lele08g1549 292 MobiDBLite consensus disorder prediction 94 138 - -
Lele08g1549 292 Gene3D - 166 286 - -
Lele08g1549 292 MobiDBLite consensus disorder prediction 22 61 - -
Lele08g1549 292 SUPERFAMILY CAD & PB1 domains 170 273 - -
Lele08g1549 292 Pfam AUX/IAA family 39 283 IPR033389 -
Lele08g1549 292 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 34 279 IPR003311 GO:0005634|GO:0006355
Lele08g1549 292 MobiDBLite consensus disorder prediction 23 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1549 Lele-ChrLele08 10166500 10168351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1549 148 290 B3 DNA Binding Superfamily AT1G19850 28.671 4.75e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele08g1549 AUX_IAA 7.8e-86 CL0072