Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1543 ATGAGCCACCAACTGGGTCTTCTTCGTCTTTCTCTTCTCTTTCTAATTTTCTTCCCTGTTACAGCACAACAACAACAGATGAACGATAGTGCCCCTTCAATCGATGGAATCGCCAATTTCCAACCAAGTTTAGCAGTTGTCATAGGAATCCTATGTCTTATGTTTTCACTCACATTCATTCTTCTCTTGTATGCCAAGTTCTGTCAACGCAGAGCTTCAGCTCACGTTGACCCGGAGAACCTCCCTGAACTAGTGAGATCAAGATCCAGAAGATTCTCAGGAATCGACAAGACTGTCATAGAATCTCTTCCCTTCTTCAGATTCTCTGCTCTCAAAGGTTCAAAAGAAGGCCTTGAATGTGCAGTTTGTTTGTCAAAGTTCGAAGATATAGAAATCCTCAGACTTCTTCCCAAATGCAAACATGCTTTCCACATCGATTGTATTGATCATTGGCTTGAGAGACACTCAAGTTGTCCTCTTTGTAGACGAAAGGTAAGTTCTGATGATCCAACCATGCTTACTTATTCAAACAGTTTGAGGCTTCTAATAACAAACCAGTCAGAGAATAATGGTGAGGAACCCAACATAGAGATCTTTGTTCAGAGGGAAGAAGAACGCCATGGTTCTTCTAGATTCAGAATCGGAAGCAGCTTTAGGAAATCTGGAAAGGGTATTATTAAAGAAGAAGAGTTGCCGATCCAAGAAGAAGAAACAGAGCATGATGGTGGTGGAAAGTTGTATCACAAACATAACCACAAGATTACCATAAGTGATGTGGTGTTCCAGCAGAGATGGAGCAACGTGAGCTCTTCGGACCTCATGTTTTTGAGTTCAGAGATGATTAGTTCTGGTCAAAGCAAAAGATTCGATCTTTCAGAACCAAATGGTGAGAAGATTCGAGCTTCAACATCAAGGGAAAATGGGCAGATCATCAACAACATAAAGGAGGAGATGGAGAGGAAGATATCAATAGAGACAAAGGTCGGTGCATTAAACTCTGTCTTAGATACTTCAGATTGTGCAGGAACTTCATATTCTTCAAGTCATACATCAAAATATGTGAATCCGAGGGAGAAAAGATCGATGTCGGAAATCACTGGTGTGTCTAGATTCAGAGATTTGGGTATGAGAAGAGACAGAGTGTTGAGGGATTCTTCAATGATTGCGAGTGATGTTAAAGAGGAAAGAAGGAGACAGCTATGGCTTCCAATAGCCAGAAAAACTGTTCAATGGTTTGTGAATAGGGAAAGATCTCAGCCATTAAATGTATAG 1272 0.4088 MSHQLGLLRLSLLFLIFFPVTAQQQQMNDSAPSIDGIANFQPSLAVVIGILCLMFSLTFILLLYAKFCQRRASAHVDPENLPELVRSRSRRFSGIDKTVIESLPFFRFSALKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHIDCIDHWLERHSSCPLCRRKVSSDDPTMLTYSNSLRLLITNQSENNGEEPNIEIFVQREEERHGSSRFRIGSSFRKSGKGIIKEEELPIQEEETEHDGGGKLYHKHNHKITISDVVFQQRWSNVSSSDLMFLSSEMISSGQSKRFDLSEPNGEKIRASTSRENGQIINNIKEEMERKISIETKVGALNSVLDTSDCAGTSYSSSHTSKYVNPREKRSMSEITGVSRFRDLGMRRDRVLRDSSMIASDVKEERRRQLWLPIARKTVQWFVNRERSQPLNV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1543 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 417 - -
Lele08g1543 423 CDD RING-H2_PA-TM-RING 119 162 - -
Lele08g1543 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 170 IPR013083 -
Lele08g1543 423 SMART ring_2 120 161 IPR001841 -
Lele08g1543 423 Pfam Ring finger domain 119 162 IPR001841 -
Lele08g1543 423 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Lele08g1543 423 FunFam RING-H2 finger protein ATL43 95 169 - -
Lele08g1543 423 SUPERFAMILY RING/U-box 99 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1543 Lele-ChrLele08 10089744 10091015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1543 13 423 C3H Transcription Factor Family AT4G28890 45.767 1.09e-103 312