Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1494 ATGAATGATAGCTAACAGTCCTCCTCTATGATGCTCGGAGAACCCCATCGAGCGAATCCGACGGTTCACATACCGCGGTGGTCGGTCATCGATGATCCGATGCCGGAGATATACCCTCCTTACTCCATGAGTGGCATGTCTGCCAACTCCGACGGCAATGCCAGCGGTGGCGATTACTCTCCGTACTACTTTCAAGAAGCACTGACGGCACTCCAGCGTTATCTGCCGTCGAACGACGCCGATATCGACTCCGACTCCGAGATTCTTGGTCGAGAGTTGGACGCTCCGGTGGATGCCTACTCCTGCGACCATTTCCGCATGTTCGAGTTCAAGGTGAGGAGGTGCGCACGTGGCCGATCACATGACTGGACTGAGTGTCCTTATGCTCATCCTGGCGAGAAGGCTCGCCGTAGGGATCCGAGGAAGTATCACTATTCGGGTACTGCTTGCCCTGATTTCCGCAAAGGGAATTGCAAGAAGGGAGATGCATGCGAGTTTGCTCATGGCGTGTTTGAGTGCTGGCTTCATCCAGCCCGTTATCGTACACAGCCATGCAAGGACGGCACCAGTTGCCGCCGAAGGGTCTGTTTCTTTGCTCACACGCCGGAGCAACTCAGGGTCCTTCCTCAGCAGAGTCCGAGGAGCGCTAACTCGGTGGACTCATATGACGGGTCTCCTCTCAGGCAAGCGATTGAGTCTTGCGCAAAACCGCTTCCATTCATGTCGTCTCCGGGATCTATTTCCCCTCCAGCAACTCCTCCGACAGAATCTCCTCCTATGTCACCGATGACAGAGTCTCTGAGCCACTCTCTGGGTTCGAGCTCCATCAATGAGATGGTGTTTTCCCTGCGTAATTTACAGCTTGGAAAGGTAAAGTCACTACCCCCTTCTAGAAATGTTCCAATGGGGTCTCCCCGTTTTGGATCTCCACGTGGATCGGTGCTCCGTCCAGATTTCTGTAGCCTACCGTCGACCCCTACCGAGGCACCGACTCGTTCTGGTGCCAGCTATTTCGATCTTTGGGATCAGAGTTGTGAGGAGGAGCCTGCCATGGAGAGGGTGGAATCTGGAAGGGGCATAAGGGCGAAGATGTTTGAAAAACTTAGCAAAGAGAACTCTCTTGATGGATCGGGTCCCAGCACATCCGCTGGAGCTCCGGATGTTGGTTGGGTTTCAGAGCTAGTTAAGTGA 1191 0.5416 MNDSXQSSSMMLGEPHRANPTVHIPRWSVIDDPMPEIYPPYSMSGMSANSDGNASGGDYSPYYFQEALTALQRYLPSNDADIDSDSEILGRELDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANSVDSYDGSPLRQAIESCAKPLPFMSSPGSISPPATPPTESPPMSPMTESLSHSLGSSSINEMVFSLRNLQLGKVKSLPPSRNVPMGSPRFGSPRGSVLRPDFCSLPSTPTEAPTRSGASYFDLWDQSCEEEPAMERVESGRGIRAKMFEKLSKENSLDGSGPSTSAGAPDVGWVSELVK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1494 396 SMART c3hfinal6 179 202 IPR000571 GO:0046872
Lele08g1494 396 SMART c3hfinal6 144 170 IPR000571 GO:0046872
Lele08g1494 396 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 169 IPR000571 GO:0046872
Lele08g1494 396 MobiDBLite consensus disorder prediction 367 396 - -
Lele08g1494 396 Gene3D - 145 208 - -
Lele08g1494 396 ProSiteProfiles Zinc finger C3H1-type profile. 145 171 IPR000571 GO:0046872
Lele08g1494 396 MobiDBLite consensus disorder prediction 294 317 - -
Lele08g1494 396 MobiDBLite consensus disorder prediction 243 260 - -
Lele08g1494 396 MobiDBLite consensus disorder prediction 237 270 - -
Lele08g1494 396 FunFam Zinc finger CCCH domain-containing protein 66 102 170 - -
Lele08g1494 396 PANTHER UNKEMPT FAMILY MEMBER 66 396 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1494 Lele-ChrLele08 9724124 9726304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1494 94 301 C2H2 Transcription Factor Family AT5G12850 49.541 3.31e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele08g1494 zf-CCCH 3.9e-06 CL0537