Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1472 ATGGGGAGGCCGCCTTGCTGTGATAAAGAAGGGGTCAAGAAAGGACCTTGGACTCCCGAAGAAGATATCGTTTTGGTCTCTTATATCCAGGAACATGGTCCTGGCAATTGGAGGGCTGTGCCCACTAATACAGGGCTGGCACGATGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTAAAGCCAGGAATTAAACGTGGTAACTTCACAGACCAAGACGAGAAGATGATCATCCATCTTCAAGCCCTTTTGGGCAACAGATGGGCAGCCATAGCCTCGTACCTTCCACAGAGAACCGACAATGACATAAAGAACTATTGGAATACCCATTTGAAAAAGAAGCTCAAGAAATTGCAAGCTTCTTCAGTTGGTCATGAGTCAATGCCCCGAGGGCAGTGGGAAAGGAGGCTTCAAACAGACATCCACATGGCCAAGAGAGCTCTTACCCAGGCTCTATCTCCAGATCAAACACCTTTTTGCTTATCATCGGAATCATCAATTCCCTCCAATAATAAGCCAGCAACAACCCAGTGCTTAAGTTATGCCTCAAGTGCAGATAACATAGCTCGTTTGTTGAAAGGATGGATGAAAAATCAACCAAAGCCCTCCACAACAGTCACACAAGGTTCTATAAATAACCTAGCTGCTTCTGCTTCAGGTAACGATACTGCTTCTAGCGAGGGAATTACCACTACAGGTGCATCGAAGGGAAACAGTAGAACTGTTCAATTATATGACACTAGTTTTGACTCCTTGTTGGTGTTTGAGTCTTTGGATTATTGCTCTTCGAATTGTGATTTTTCTCCAGAGGCTACTCTTGAAAGCAAGGCGGATTGTAAAGGGACCGAAATACCCTTATATTTGCTTGAGAAGTGGCTTCTCGATGACGCTGCTACCATCACATCATCAGTAGTTGAAGATGCAAACGTCGATTTTTTCTAA 945 0.4423 MGRPPCCDKEGVKKGPWTPEEDIVLVSYIQEHGPGNWRAVPTNTGLARCSKSCRLRWTNYLKPGIKRGNFTDQDEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQASSVGHESMPRGQWERRLQTDIHMAKRALTQALSPDQTPFCLSSESSIPSNNKPATTQCLSYASSADNIARLLKGWMKNQPKPSTTVTQGSINNLAASASGNDTASSEGITTTGASKGNSRTVQLYDTSFDSLLVFESLDYCSSNCDFSPEATLESKADCKGTEIPLYLLEKWLLDDAATITSSVVEDANVDFF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1472 314 FunFam Transcription factor MYB30 68 126 - -
Lele08g1472 314 SMART sant 13 63 IPR001005 -
Lele08g1472 314 SMART sant 66 114 IPR001005 -
Lele08g1472 314 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele08g1472 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Lele08g1472 314 CDD SANT 69 111 IPR001005 -
Lele08g1472 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele08g1472 314 Gene3D - 68 135 - -
Lele08g1472 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele08g1472 314 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele08g1472 314 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele08g1472 314 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele08g1472 314 CDD SANT 16 61 IPR001005 -
Lele08g1472 314 FunFam MYB-related transcription factor 13 66 - -
Lele08g1472 314 MobiDBLite consensus disorder prediction 218 237 - -
Lele08g1472 314 Gene3D - 13 66 - -
Lele08g1472 314 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1472 Lele-ChrLele08 9569972 9571089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1472 1 299 MYB Transcription Factor Family AT5G62470 47.578 3.71e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele08g1472 Myb_DNA-binding 2.7e-14 CL0123