Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1465 ATGTCTAGCAGAAGATCAAGGCAACAATCGTCGTCAGGGTCTTCAAGCATCTCCGATGACCAAATCATCCAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGAGATACTCGCCGCTCTAACAAGGCATCTGCATCGAAGGTCCTACAAGAGACGTGCAACTACATCAGAAACTTAAACAGAGAAGTGGACGACTTGAGCCAGCGACTGTCTCAGTTGTTGACTACAATCGATGCCGATAGTGCCGAGGCTGCCATCATTAGGAGCCTCATTAATCCTTAA 288 0.4688 MSSRRSRQQSSSGSSSISDDQIIQLVSKLRQLVPEIRDTRRSNKASASKVLQETCNYIRNLNREVDDLSQRLSQLLTTIDADSAEAAIIRSLINP 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1465 95 Pfam Helix-loop-helix DNA-binding domain 22 61 IPR011598 GO:0046983
Lele08g1465 95 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 61 IPR011598 GO:0046983
Lele08g1465 95 Coils Coil 51 78 - -
Lele08g1465 95 Gene3D - 18 90 IPR036638 GO:0046983
Lele08g1465 95 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 25 80 IPR036638 GO:0046983
Lele08g1465 95 PANTHER TRANSCRIPTION FACTOR PRE 1 93 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lele08g1465 95 FunFam Transcription factor ILI6 5 90 - -
Lele08g1465 95 CDD bHLH_AtPRE_like 19 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1465 Lele-ChrLele08 9509872 9510940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1465 17 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.623 4.59e-37 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele08g1465 HLH 0.00014 No_clan