Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1454 ATGGCAGAAGGTGCAAATAAGGCCACCTTTCTCTTCTTCTTGGCCATTTTCGCCATTTCTATTCCATGCCTACAAGCCGACGATGACATTGCCGCCGAGCACGACGACTATTACATTAAACGATCTGAGGAAGCCCGTAAAGCTGCTCTTGAAGCCTACGAGCCCGACCCCTATAATGTCACCTCGGAACTCAATCTCCACGTTCACTTAGCGATGGAGGAGAGCAATAGGAGGGAACTAAAGGGTCATCGTGGCGGCCATCATGCTCGTCACAATGGACCATGCATGGCCACCAACCCTATTGACAGTTGCTGGCGGTGCAGGCCCGATTGGGCCACAGATCGCATGAGGTTAGCTACATGCGTCAAGGGTTTTGGCCGGAAGACCACCGGAGGACATGGCGGCCGGATATATGTGGTCACCGACCCCTCCGACGGTGACTTGGTTCACCCGAAGCCCGGAACTCTGAGGTTCGGGGTGGTCCAGAACGAGCCATTGTGGATCATCTTCGAACGCGACATGACCATCGTTCTGCAACAGGAACTCATGGTTAACTCGCACAAGACCATCGACGGTCGTGGCGCCAACGTCCACATCACAGGAGGTGCTAGCATTTCCCTGTTCATGGTCACCAACGTCATCGTCCACAACCTTCGCATCCACAACGTCGTGTCCAAGTCAGGGGGTCTCATTAGGGACTCCGCTAACCACTTCGGTATCAGAACCAGGAGCGATGGAGACGCCATCTCCATCTACGCCTCCTCCAACATCTGGATCGATCATATTTCAATGTCCCATGCCGCTGATGGGCTTGTCGACGTCATCCAAGGCTCCACCGGCGTCACCATCTCCAATTGCCACATGACCAATCACAACGACGTGATGCTGTTAGGAGCAAACGATTTCTACTCAGCTGACAAGGTGATGCAGGTGACGGTGGCGTTCAACCATTTCGGGCAGGGACTGATACAGAGGATGCCGAGGGCAAGATTTGGATTCGTGCACGTAGTGAACAACGACTATACTCACTGGCAGATGTACGCCATAGGAGGAAGCTCGGCGCCGACGATACTGAGTCAGGGGAACCGATTCATTGCTCCGAACGACAACGCGGCTAAGGAGGTGACGCACAGGGAGTACGCGACGCCGAAGCAATGGAGCTCGTGGAAGTGGACGTCAGAGATGGACTTGTTCATGAACGGAGCAACGTTTCTTCAGTCGGGAGGGCGCGTAACGGCACAGTCATACGATAAAGAAGCCATGATCCAACCCAAAGATGGATCTGCTGTGACGATGATGACCAGGTTCTCTGGTTCTCTGGGTTGCCGAGTGGGAAAGCCTTGCTAG 1347 0.5419 MAEGANKATFLFFLAIFAISIPCLQADDDIAAEHDDYYIKRSEEARKAALEAYEPDPYNVTSELNLHVHLAMEESNRRELKGHRGGHHARHNGPCMATNPIDSCWRCRPDWATDRMRLATCVKGFGRKTTGGHGGRIYVVTDPSDGDLVHPKPGTLRFGVVQNEPLWIIFERDMTIVLQQELMVNSHKTIDGRGANVHITGGASISLFMVTNVIVHNLRIHNVVSKSGGLIRDSANHFGIRTRSDGDAISIYASSNIWIDHISMSHAADGLVDVIQGSTGVTISNCHMTNHNDVMLLGANDFYSADKVMQVTVAFNHFGQGLIQRMPRARFGFVHVVNNDYTHWQMYAIGGSSAPTILSQGNRFIAPNDNAAKEVTHREYATPKQWSSWKWTSEMDLFMNGATFLQSGGRVTAQSYDKEAMIQPKDGSAVTMMTRFSGSLGCRVGKPC 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1454 448 Pfam Pectate lyase, N terminus 32 80 IPR007524 GO:0030570
Lele08g1454 448 SUPERFAMILY Pectin lyase-like 99 438 IPR011050 -
Lele08g1454 448 SMART amb_all 173 370 IPR002022 -
Lele08g1454 448 Pfam Pectate lyase 181 364 IPR002022 -
Lele08g1454 448 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Lele08g1454 448 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Lele08g1454 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Lele08g1454 448 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Lele08g1454 448 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Lele08g1454 448 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Lele08g1454 448 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Lele08g1454 448 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Lele08g1454 448 PANTHER PECTATE LYASE 18-RELATED 45 446 IPR045032 GO:0030570
Lele08g1454 448 Gene3D - 98 441 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1454 Lele-ChrLele08 9425547 9427089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1454 11 448 Polysaccharide Lyase AT5G15110 53.533 0.0 518