Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1441 ATGGCCAAGAATAGATTCGTGTGCGAGATTTGCAACAAGGGGTTTCAGAGGGACCAGAACCTGCAGTTGCACAGAAGGGGACACAATCTGCCATGGAAGCTGAGGCAGAGGCCGAGCACGGAGGTGAAGAAGAGGGTGTACGTGTGCCCTGAGCCCTCCTGCGTGCACCATAACCCAGCTCGAGCACTCGGAGACCTCACAGGGATCAAGAAGCATTACAGCAGAAAGCATGGCGAGAAGAAATGGAAGTGTGATAAGTGCTCCAAAAGATACGCCGTCCAATCTGACTGGAAGGCTCACCAGAAAACCTGCGGTACCAGAGAATATAAATGCGATTGTGGCACCATTTTCTCCAGGAGAGATAGCTTCATCACCCACAGGGCCTTTTGTGACGCGTTAACTGAAGAAAATAACAGAGTGAACCAAGTATTAAGCAGCGGCTTGCAATCCAACTTGCAAAATCAGGTGCCAGCTGATCTTATGCCCCCTATGCCTCTCCCAACCTCCTCCGACTTCAACAACCCCCTCCGGTCCCTCTCTCAGGACCTCGGCCCAGGCCCTTTTAAGCCCATGAGCATGGGTGGGCCCATGTTCTCCACAACATCCGGATCCCTCTTCGCTGGCCCAAAGCCCATCTCTCCCTCCTCCTCCTCCGCTCTCCAGCTCAGTTCCAACACTTCCTCTCCCACCTTCAGTTACTTCCCCGACAGCAAAAAGGGCCCAATGATTTCTGGGTCAGCCCAAATGTCTGCAACGGGTTTGTTACAGAAAGCGGCCCAAATGGGTGCTACCGCAAGCAGCAACAGCATCAACTCTCCCATGATGCAGAACTTGGTCACTAGTATGGCTGGTCCTGATCATACAATTAACAAACCCCCATTTTCTGCTGCTGAACCTTCCTCCTTCGATCACTTCCAACCTCATCGTGATCAATCCAACGTGGCCGGGATTAGTGGTGGTGGAACACTCACCAAAGAAATTTCAGAACTGTTTGATGCTACTGGTGGTGCTGCTTCTGCTGCTACTGGATCCGCAATTTCTGGTATGGGTATGTTCAGCCAGATTTTCCTTGCAAGTGATCATCAGAACCCAGGAGGATTGATGATGAAAAACCATGTGCAACGAGAGAATAGGACCACCAGTTCAGGTTTGATAATGCATGGAAGAGATGTAGGAGGAGAGAATCCAATGGGGCCAAATATTGCAACGGTTCATGATTTCTTGGGTGTTGGGGGTTCGGCGAATTTTCATGAACAAGAGCAACAAAGGTTGGAGTTCGAAGTCATGAATCACCAGAGAGTATCAGTTATGAATCATCACTTTCAACACCATCTTCCTCATGGGGATTCACCTTTGGATAAACCCATTTGGGATGTTTGA 1380 0.4993 MAKNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRPSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQVLSSGLQSNLQNQVPADLMPPMPLPTSSDFNNPLRSLSQDLGPGPFKPMSMGGPMFSTTSGSLFAGPKPISPSSSSALQLSSNTSSPTFSYFPDSKKGPMISGSAQMSATGLLQKAAQMGATASSNSINSPMMQNLVTSMAGPDHTINKPPFSAAEPSSFDHFQPHRDQSNVAGISGGGTLTKEISELFDATGGAASAATGSAISGMGMFSQIFLASDHQNPGGLMMKNHVQRENRTTSSGLIMHGRDVGGENPMGPNIATVHDFLGVGGSANFHEQEQQRLEFEVMNHQRVSVMNHHFQHHLPHGDSPLDKPIWDV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1441 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 28 IPR013087 -
Lele08g1441 459 FunFam Zinc finger protein MAGPIE 2 29 - -
Lele08g1441 459 SMART c2h2final6 47 77 IPR013087 -
Lele08g1441 459 SMART c2h2final6 6 28 IPR013087 -
Lele08g1441 459 SMART c2h2final6 82 102 IPR013087 -
Lele08g1441 459 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lele08g1441 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 425 IPR031140 -
Lele08g1441 459 SUPERFAMILY beta-beta-alpha zinc fingers 5 103 IPR036236 -
Lele08g1441 459 Gene3D Classic Zinc Finger 2 29 - -
Lele08g1441 459 Gene3D Classic Zinc Finger 61 140 - -
Lele08g1441 459 FunFam protein indeterminate-domain 5, chloroplastic-like 60 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1441 Lele-ChrLele08 9306189 9307683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1441 1 139 IDZ Gene Family AT3G50700 86.331 2.61e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g1441 None None None