Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1430 ATGGATGGGGATCAGGAAACAAGTGTGGCTGCATCATCATCAGTGGCTCCAAAGAAGAAGAAGAATGGGTCCATTCGATCCATTTTCATGCACGCCGATACATTAGATTGGTTCCTCATGATCCTCGGCCTCGTTGGGTCCCTCGGCGACGGTTTCACCACCCCTCTCATCCTCCTCATCAGTAGCCGCTTGATGAACAATATTGGCTCTGGTCCTACCCTCGATCCCAATGCTTTTACCCATTCCATTAACAAGAATGCGGTGGCCTTGATGTATTTAGCTGCTGGCTCCTTCCTAACCTGCTTCCTCGAGGGGTATTGCTGGACAAGAACAGGGGAGAGACAAGCAGCGAGAATGAGAGCCAGGTATTTAAAAGCTGTGCTCAGACAAGATGTTGCTTACTTTGATCTGCACGTGACAAGCACGTCGGAGGTGATCACCAGCGTCTCCAACGACAGCCTTGTAATTCAAGATGCTATTGCTGAGAAGGTTCCAAACTTCTTGATGAACGTGTTTACGTTCATCGGGAGTTACATAGCGGCTTTTGCAATGTTATGGAGACTGGCTATTGTGGGGTTCCCATTCGTGGTGCTTTTGGTGATTCCTGGTTTACTCTACGGAAGGACTCTTATGGGGTTGGCGAGGAAGATCAGAGAGGAGTATAATCTCGCTGGTACAGTTGCAGAGCAGGCGATATCTTCCATAAGAACGGTGTATTCCTTCGTCGGAGAAAACAAAACCATAGCCGCTTTCTCTGATGCTTTACAAGGATCTGTTAAATTGGGTCTCAAACAGGGCTTAGCTAAGGGATTAGCCATCGGAAGCAACGGCATCGTCTTCGCCATCTGGTCATTCATGTCCTATTACGGCAGCACCCTCGTCATGTACCACGGCGCTCAAGGCGGTACCGTCTTCGCCGTCGGAGCCGCCATTGCAGTCGGTGGCCTATCTTTAGGGGCGGCTTTATCGAACATGAAGTACTTCTCGGATGCGAGTACAGCAGGGGAACGGATAATGGAAGTGATAAAAAGAGTGCCGAAGATTGATTCGGACAACATGAGTGGAGAGATTCTAGAGGGCGTTTCAGGGAAAGTGGAATTCGATCGGGTACAGTTCGCGTACCCGGCCAGAGCAGGGAGCATAATCCTGAACGATTTCAGCTTGAAGATTCCAGCGGGGAAGACGATGGCGTTAGTGGGTGGGAGTGGATCAGGGAAATCAACAGTGATATCACTTTTGCAGAGATTTTATGACCCACTTGTGGGAGAGATAAGACTCGATGGTGTGGCCATTCACAAGATGCAGCTCAAGTGGCTGAGGTCACGGATGGGTCTGGTCAGCCAAGAGCCTGCTCTGTTCGCCACCACCATCAAGGAGAACGTTCTCTTTGGAAAAGAAGATGCTTCCATGGAAGAGGTTATCGAATCTGCCAAAGCTTCTAATGCTCATAATTTCATTTCTCACCTTCCTCAGGGCTACGATACTCAGGTTGGTGAAAGAGGAGTTCAAATGTCAGGGGGGCAAAAGCAGAGGATTGCCATTGCGAGAGCAATAATAAAGAAACCGAGATTGCTTCTGCTAGATGAAGCAACCAGTGCGTTAGATTCTGAATCAGAGCGAGTTGTTCAAGAAGCTCTGGACAAAGCAGCCGTGGGTCGCACCACAATCATCATCGCTCACCGTTTATCCACCATCCGAAACGCCGACGTCATTGCCGTCGTCCAGAACGGAAAGATCATGGAGATGGGCTCGCACGACGAGCTCATCCAAAACGACGATGGCCTTTACACTTCTTTGGTTCGTCTTCAACAAACGGAACAATTGAAAACTCAACAAGAAGATGTTGTCCCTACGCCGTCGTCTATATCAAACAGAGACATGAACAACACAAGTAGCCGTAGGCTTTCCCTGGTGAGTCGTTCTAGCTCTGCTAATTCAATGGCAAGGAATCCAGCTTCAGTTGCTGATGAAGACGATGGTCATAATCATGTTACAGAAGATCAGAAATTCCCTGTTCCTTCGTTTCGGAGATTGTTGGCTCTTAATCTCCCAGAATGGAAGCAGGCAATTATGGGGTGTATAAGTGCTGTTCTCTTTGGTGCGGTCCAGCCATTGTACGCATTCGCAATGGGGTCTATGATATCTGTGTATTTCTTGACGGACCACGATGAGATGAAAAAGAAAACGAGAACTTATGTTCTCTGCTTTTTGGGGTTGGCTATCTTCTCTTTACTTATTAATATATGCCAGCATTATTATTTCGCTTACACGGGAGAGTACCTGACGAAAAGGGTTAGAGAGAGAATGCTCTCCAAGATTCTCACATTTGAAGTCGGATGGTTCGATCAGGACGAGAATTCTAGTGGTGCTATTTGCTCTCGACTTGCTAAAGATGCAAATGTGGTGAGGTCTTTGGTGGGGGATAGAATGGCTTTACTGGTACAAACTTGTTCAGCAGTGACAACAGCCTGCACAATGGGGATTGACACTGATGGTCTCAGAGAAAGTGTGAAGGAACTATTCAAAGGGCATAGCCATTTGATTTCTGGATTCAATGTCTTCTTGCCCAAAGGCCATGAGATAACGCCTGATGAATATAGAGCTCCTCCAAAGAAAGTGGTTGCCCAAAGTGTTTTGCTCTCCCAGAAACGACTTCAAAATGATGATCATGCACGCCAATCATTCTGGAACACTATGAAAATGTTCCACGCAGGGAGAAAGGAAGTAACTGAGGTCTATATGGAGGTTTCTTGCCTTCTTCGGAACCATCCTGACTTGCTCGAGGAGTTCCACAGATTTTTGCCAAATGGTTTTCCAATACTTTCTATACAGCATGCACCATATGGTCAAAGTTTAGCTGATCAGTGTTTTAACGGGCAGAGTTCTACAACAGCCGCTAAGCAGCAATTGCAACTGGACAAGGCAATTTTTTAA 2934 0.4707 MDGDQETSVAASSSVAPKKKKNGSIRSIFMHADTLDWFLMILGLVGSLGDGFTTPLILLISSRLMNNIGSGPTLDPNAFTHSINKNAVALMYLAAGSFLTCFLEGYCWTRTGERQAARMRARYLKAVLRQDVAYFDLHVTSTSEVITSVSNDSLVIQDAIAEKVPNFLMNVFTFIGSYIAAFAMLWRLAIVGFPFVVLLVIPGLLYGRTLMGLARKIREEYNLAGTVAEQAISSIRTVYSFVGENKTIAAFSDALQGSVKLGLKQGLAKGLAIGSNGIVFAIWSFMSYYGSTLVMYHGAQGGTVFAVGAAIAVGGLSLGAALSNMKYFSDASTAGERIMEVIKRVPKIDSDNMSGEILEGVSGKVEFDRVQFAYPARAGSIILNDFSLKIPAGKTMALVGGSGSGKSTVISLLQRFYDPLVGEIRLDGVAIHKMQLKWLRSRMGLVSQEPALFATTIKENVLFGKEDASMEEVIESAKASNAHNFISHLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRLLLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQNGKIMEMGSHDELIQNDDGLYTSLVRLQQTEQLKTQQEDVVPTPSSISNRDMNNTSSRRLSLVSRSSSANSMARNPASVADEDDGHNHVTEDQKFPVPSFRRLLALNLPEWKQAIMGCISAVLFGAVQPLYAFAMGSMISVYFLTDHDEMKKKTRTYVLCFLGLAIFSLLINICQHYYFAYTGEYLTKRVRERMLSKILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRMALLVQTCSAVTTACTMGIDTDGLRESVKELFKGHSHLISGFNVFLPKGHEITPDEYRAPPKKVVAQSVLLSQKRLQNDDHARQSFWNTMKMFHAGRKEVTEVYMEVSCLLRNHPDLLEEFHRFLPNGFPILSIQHAPYGQSLADQCFNGQSSTTAAKQQLQLDKAIF 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1430 977 ProSiteProfiles PAH domain profile. 862 937 IPR003822 GO:0006355
Lele08g1430 977 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele08g1430 977 SUPERFAMILY PAH2 domain 826 857 IPR036600 GO:0006355
Lele08g1430 977 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 338 - -
Lele08g1430 977 MobiDBLite consensus disorder prediction 608 667 - -
Lele08g1430 977 SMART AAA_5 392 578 IPR003593 -
Lele08g1430 977 Gene3D - 355 604 IPR027417 -
Lele08g1430 977 PANTHER ABC TRANSPORTER B FAMILY 6 746 - -
Lele08g1430 977 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Lele08g1430 977 Pfam ABC transporter transmembrane region 40 307 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele08g1430 977 Pfam ABC transporter transmembrane region 690 827 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele08g1430 977 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 826 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele08g1430 977 SUPERFAMILY ABC transporter transmembrane region 29 349 IPR036640 GO:0005524|GO:0016020
Lele08g1430 977 Gene3D ABC transporter type 1, transmembrane domain 654 830 IPR036640 GO:0005524|GO:0016020
Lele08g1430 977 SUPERFAMILY PAH2 domain 884 937 IPR036600 GO:0006355
Lele08g1430 977 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Lele08g1430 977 SUPERFAMILY ABC transporter transmembrane region 671 826 IPR036640 GO:0005524|GO:0016020
Lele08g1430 977 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Lele08g1430 977 MobiDBLite consensus disorder prediction 608 650 - -
Lele08g1430 977 CDD ABC_6TM_Pgp_ABCB1_D2_like 679 828 - -
Lele08g1430 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 603 IPR027417 -
Lele08g1430 977 Pfam Paired amphipathic helix repeat 893 934 IPR003822 GO:0006355
Lele08g1430 977 FunFam ABC transporter B family member 4 355 612 - -
Lele08g1430 977 Gene3D ABC transporter type 1, transmembrane domain 28 610 IPR036640 GO:0005524|GO:0016020
Lele08g1430 977 Gene3D Paired amphipathic helix 881 935 IPR036600 GO:0006355
Lele08g1430 977 Pfam ABC transporter 383 532 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1430 Lele-ChrLele08 9240303 9250063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1430 17 827 Calmodulin-binding Proteins AT2G36910 43.621 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele08g1430 ABC_membrane 3.2e-49 CL0241