Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1422 ATGGGAAGGCCACCTTGCTGTGATAAATCCAATGTGAAAAGGGGCCTTTGGACTCCCGAGGAGGATGCTAAATTACTCGCTTATGTCTCCAATCATGGCACTGGCAATTGGACTCTTGTTCCTAAGAAAGCTGGGTTAAACAGATGTGGTAAGAGCTGTAGGCTTAGATGGACTAACTATCTAAGACCTGACCTCAAGCATCATAGCTTCACTCCCCAAGAGGAAGAACTTATTATTAACCTTCATCAAGCCATAGGAAGCAGGTGGTCTTTGATTGCAAGGAGACTCCCTGGGAGAACAGACAATGATGTGAAGAACCACTGGAACACAAAGCTGAGAAAGAAGCTTATGAAAATGGGAATTGACCCAGTGACCCATAAGCCTGTGTCTCAAGTCCTTTCTGATTTGGGAACTATTAGTTGCCTTTCAACTGTAACAACTGAAACACAAGTTCCAAACAGCAACGTAATGGTCTCTAATCAACTAGATCAAGAGGTGCAATCCCAATTCATTTTTAACCCAGCTGAGAATAACGTCCACTCACACCATGATAATAATGAAGCTGCGTCTTCATGTTCATCACCGTCGTCGTCTTCTTCCTCTAATATCACACAACTTATAAGCTCACCTCCTCAGGTTACTACAACTACTGCTGCAGTTGTTCCCGCTCCTCCTTGTTCATCGTTTGATTGGAGAGAGTTTCTTCTTAGTGACCCGCTCGTGTGCACCGAGTTACAACAGCTGAACCAGTACGACGTCGTGCATGGGGTTTTGTCGTCGTCGTTGAGTCCCTCAGTTATGATGCAGAACCAAATACAAGTTTCGAATAATAATGCAAGTGATGAGGACTCGGGGCTTGTGGCTTATGAGGAAAGCATGAAGAAGGGCCAAGTTTGTGATGAGCAATATTGTGAAGGCACTTCATGTTCTTCGAGGGACGACGACGCATTCGTGGATGCTATTTTGAACAGGGATAGTGAGATTAGGGCAGCTTTTCCTCTACTCCTGGACGGTTCCGCTGATTACTAG 1029 0.45 MGRPPCCDKSNVKRGLWTPEEDAKLLAYVSNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHHSFTPQEEELIINLHQAIGSRWSLIARRLPGRTDNDVKNHWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGTISCLSTVTTETQVPNSNVMVSNQLDQEVQSQFIFNPAENNVHSHHDNNEAASSCSSPSSSSSSNITQLISSPPQVTTTTAAVVPAPPCSSFDWREFLLSDPLVCTELQQLNQYDVVHGVLSSSLSPSVMMQNQIQVSNNNASDEDSGLVAYEESMKKGQVCDEQYCEGTSCSSRDDDAFVDAILNRDSEIRAAFPLLLDGSADY 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1422 342 SMART sant 13 63 IPR001005 -
Lele08g1422 342 SMART sant 66 114 IPR001005 -
Lele08g1422 342 Gene3D - 68 131 - -
Lele08g1422 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele08g1422 342 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lele08g1422 342 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele08g1422 342 CDD SANT 17 61 IPR001005 -
Lele08g1422 342 MobiDBLite consensus disorder prediction 177 207 - -
Lele08g1422 342 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele08g1422 342 FunFam transcription factor MYB80 69 129 - -
Lele08g1422 342 FunFam Transcription factor RAX3 7 67 - -
Lele08g1422 342 Gene3D - 7 67 - -
Lele08g1422 342 PANTHER F14D16.11-RELATED 1 342 - -
Lele08g1422 342 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele08g1422 342 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Lele08g1422 342 CDD SANT 69 112 IPR001005 -
Lele08g1422 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1422 Lele-ChrLele08 9170630 9171850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1422 1 337 MYB Transcription Factor Family AT3G28470 46.307 3.64e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele08g1422 Myb_DNA-binding 2.7e-16 CL0123