Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1412 ATGTATACAAATAGCAAGCTAGCTGTACTGGCCTGGGCTAGTAGATGTTTACTGGCCGTAATGCTAGCATTGTTGCCTCTCCTGCACAAGGATCTGTTTTCATCTGGATTACGTAAGCGGTCTGGTGTTCTTCTGTATGGTCCCCCAGGAACTGGCAAAGCTAGATCATCACGAACATGTATTATCTTCTTCGATGAGCTTGATTCTCTTGCTCCAGCTCGGGTTGCTTCCGGGGATTCTGGGGGTGTTATGGACAGAGGTATTTCTCAGATGCTGGCGGAGATTGATGGCCTGAATGATTCTGCACAGGTCTTGGTGGAGCTGACGCCTTCTCTATCCATGGCTGAGCTTAAAAATACTACAGCCACTACTTTCGCCTTTGGGCTCATTTCCATTTTGTTTGTGCTTTTCAAAGTTCGTGTTTTCAGTGCATCGAAGGAGGCTCGCCTTCATTTCAGAGACCGAAAGCAAACCATGGGAGGAATCCTCTCTAGCCTTGTGGGAGGCGGTGAAGCTTCAGCTGCTGCGCCGGAGAATTCTCGGGTCGTGCCGTTTCACTCTTCCGCGCGATGGCAGCTCCATTTCAATGAAGTCAAAGATTCCAATCAGCTCATCGTGATAGATTTCTCAGCATCGTGGTGCGGGCCATGTAAGTTCATAGAGCCGGCCATCCACGACATGGCCGACAAGTTCTCCGACGTTGAATTCGTCAAGATCGATGTGGACGAGCTCTCTGATGTGGCGCGGGAATTCCAGGTGCAGGCGATGCCGACGTTTGTGTTGTGGAAGAAGGGGAAGGAGGTAGACAGGGTGGTCGGTGCCAAGAAGGACGAGCTTGAGAAGAAGGTCCAGAAACTGAGTGCCGCTTGA 870 0.5069 MYTNSKLAVLAWASRCLLAVMLALLPLLHKDLFSSGLRKRSGVLLYGPPGTGKARSSRTCIIFFDELDSLAPARVASGDSGGVMDRGISQMLAEIDGLNDSAQVLVELTPSLSMAELKNTTATTFAFGLISILFVLFKVRVFSASKEARLHFRDRKQTMGGILSSLVGGGEASAAAPENSRVVPFHSSARWQLHFNEVKDSNQLIVIDFSASWCGPCKFIEPAIHDMADKFSDVEFVKIDVDELSDVAREFQVQAMPTFVLWKKGKEVDRVVGAKKDELEKKVQKLSAA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1412 289 Coils Coil 276 289 - -
Lele08g1412 289 ProSiteProfiles Thioredoxin domain profile. 170 288 IPR013766 -
Lele08g1412 289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 106 IPR027417 -
Lele08g1412 289 Pfam ATPase family associated with various cellular activities (AAA) 56 106 IPR003959 GO:0005524|GO:0016887
Lele08g1412 289 Gene3D - 13 53 IPR027417 -
Lele08g1412 289 PRINTS Thioredoxin family signature 205 213 - -
Lele08g1412 289 PRINTS Thioredoxin family signature 252 263 - -
Lele08g1412 289 PRINTS Thioredoxin family signature 213 222 - -
Lele08g1412 289 Gene3D Glutaredoxin 170 288 - -
Lele08g1412 289 ProSitePatterns Thioredoxin family active site. 206 224 IPR017937 -
Lele08g1412 289 FunFam Thioredoxin 181 288 - -
Lele08g1412 289 Pfam Thioredoxin 195 284 IPR013766 -
Lele08g1412 289 SUPERFAMILY Thioredoxin-like 174 286 IPR036249 -
Lele08g1412 289 PANTHER THIOREDOXIN 182 285 - -
Lele08g1412 289 CDD TRX_family 194 284 - -
Lele08g1412 289 Gene3D - 54 106 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1412 Lele-ChrLele08 9052983 9057860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1412 26 106 Calmodulin-binding Proteins AT3G56690 32.520 7.83e-10 57.8