Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1410 ATGGAGCTGTACGGTCGGAATCCGGCTAGGAATGGGTCGCAACCGGGTAATCAATCTGAATGGCACCCATCAGGCGGCGAAACTGGGCTTGAAGAATCGATGTGGCACTTAACCGTCGGTGGCAGCGAATCTTACCCGGAGCGACCCGGCGTACCCAATTGTGTTTATTACATGCGAACCGGGTTCTGTGGATACGATAGCAGGTGCCGCTACAATCATCCTCGTGATCGTGCCGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTAAAAACTGGAACCTGCAAATTTGGCGCATCCTGTAAATTTCACCATCCAAAACACGGAGGTGGATCATTAAATCAAGCTCCACCAAATATTTATGGATACCCATTACGTCCGGGTGAGAAAGAATGCTCCTACTATTTGAAGATGGGGCACTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTAATCCAGCTGGCGCATCAATGCCAGCATCTGCGCCTCAGTTTTATCAACAGGTGCAATCTCCTACGGTCCCTCTAGCTGAACAGTATGGGGGGGCATCCAACAGTTTGAGAGTGGCTAGGCCTTCAATATTGCCTGGTTCATATGTGCAGGGTGCTTATGGTCCTGTCCTTGTTTCTCCTGGGGTTGTTCCCTTTACAGGATGGAGTCCGTATACGGCACCTGTGAGTCCTGTGTTGTCTCCTGACGCTCAATCTGCTGTTGGGGCTACTTCCCTGTATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCTCTTCCATCTACTACTGGCCTTTCAGGCAGTGTCCTGAAGGAACCAATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGCAAATATGGATTAGCATGTCGATATCATCATCCCAGGGACCAGACTGTGAACCGGCCACTTCTCAGTCCCATTGGTCTTCCTTTACGTCCGGGGGTGCAACCTTGTGTTTTTTACTTACAAAACGGGCATTGCAAGTTTGGCTCCACTTGCAAATTTGACCATCCTTTGGTGTCTGTGAGATACAGTCCGTCAGCATCCTCTCTCACTGATATGCCAGTAACTCCATACCCTGTCGGATCCTTGCTGTCTACCCTGGCACCGTCAACAACATCTTCAGAGCTTCGCCCTGAACTGATGTCAGGCTCAGAAGTGGAATCTTTTTCTACTAGAATGCCATCCTCTGGAAATGGTTCAAACAATTCTGTCAGTTTAATTTTCTCACAAGGTGGAACTGTCTCTCTTTCTGATGTGCAACTCTCAAGTCAAAGCCCTATTCCTTTAAGCAGTAGCAGAAGCACCAGACAAAGTGGTGGTGACATACGATGA 1419 0.4834 MELYGRNPARNGSQPGNQSEWHPSGGETGLEESMWHLTVGGSESYPERPGVPNCVYYMRTGFCGYDSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLNQAPPNIYGYPLRPGEKECSYYLKMGHCKFGITCKFHHPNPAGASMPASAPQFYQQVQSPTVPLAEQYGGASNSLRVARPSILPGSYVQGAYGPVLVSPGVVPFTGWSPYTAPVSPVLSPDAQSAVGATSLYGVTQLSSSTSAFARPYTPLPSTTGLSGSVLKEPIFPERPGEPECQYYLRTGDCKYGLACRYHHPRDQTVNRPLLSPIGLPLRPGVQPCVFYLQNGHCKFGSTCKFDHPLVSVRYSPSASSLTDMPVTPYPVGSLLSTLAPSTTSSELRPELMSGSEVESFSTRMPSSGNGSNNSVSLIFSQGGTVSLSDVQLSSQSPIPLSSSRSTRQSGGDIR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1410 472 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Lele08g1410 472 PANTHER PROTEIN PHOSPHATASE RELATED 21 388 - -
Lele08g1410 472 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Lele08g1410 472 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Lele08g1410 472 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Lele08g1410 472 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Lele08g1410 472 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Lele08g1410 472 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Lele08g1410 472 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Lele08g1410 472 MobiDBLite consensus disorder prediction 1 28 - -
Lele08g1410 472 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Lele08g1410 472 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Lele08g1410 472 SUPERFAMILY CCCH zinc finger 141 166 IPR036855 GO:0046872
Lele08g1410 472 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Lele08g1410 472 Gene3D - 125 173 - -
Lele08g1410 472 Gene3D - 295 378 - -
Lele08g1410 472 Gene3D - 48 124 - -
Lele08g1410 472 MobiDBLite consensus disorder prediction 398 433 - -
Lele08g1410 472 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Lele08g1410 472 MobiDBLite consensus disorder prediction 10 24 - -
Lele08g1410 472 SUPERFAMILY CCCH zinc finger 342 367 IPR036855 GO:0046872
Lele08g1410 472 MobiDBLite consensus disorder prediction 448 472 - -
Lele08g1410 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Lele08g1410 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Lele08g1410 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Lele08g1410 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Lele08g1410 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Lele08g1410 472 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1410 Lele-ChrLele08 9033722 9037812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1410 1 420 C2H2 Transcription Factor Family AT5G18550 50.909 1.28e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele08g1410 zf-CCCH 5.2e-08 CL0537