Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1403 ATGTACCGTGTGACGATTGCGGCCGCATCTCAATCTGTTGGCTGGCCCTATTCTGATTTCTTATGCGAGCACTACAAGAGAAGGTGCAAAATTCGAGCTCCGTGCTGTGACCAGATCTTCCCATGTCGCCACTGCCACAACGAGGCCATGAGTTCGCTGGACAACCCCAAAGAGCGCCATGAACTGGTCAGGCGTGATGTTAAGCAGGTTATATGTTCAGTCTGTGATGTTGAGCAGGAGGTTGCCAAAGTGTGTTCTAACTGTGGTGTCAACATGGGAGAATATTATTGTGAGATTTGCAAATTCTATGACGATGATACAGATAAAGAGCAATTCCATTGCGAGGAATGTGGTATTTGCAGGGTTGGTGGTCGTGATAACTTCTTTCATTGTCAGAAATGCGGATCATGCTATGCAGTCGACCTGAGAAATAATCACTCCTGTGTAGAGAACTCAATGAAGAGCCACTGCCCTGTCTGCTATGAGTATCTATTTGATTCGATTAAAGGCACCACAATTATGAAGTGTGGACATACAATGCATATGGAATGCTTTCGAGAGATGGCAGCCCATCAGTACCGTTGTCCTGTTTGCTTGAAGTCCATATTCAATATGTCAGAGGATTGGAGAAATCTAGATCTTGAGATTGAAGCTGTTCCGATGCCTCAGGAGTACAAGACTGAGGTCTCGATTCTGTGCAATGATTGCAATACCACCAGCGAGGTGTCGTTTCACGTTTTAGGTCACAAGTGCAGACAGTGCGGTTCCTACAACACCCGTAGGATTTCAACCCCTGAACATAAATGA 807 0.456 MYRVTIAAASQSVGWPYSDFLCEHYKRRCKIRAPCCDQIFPCRHCHNEAMSSLDNPKERHELVRRDVKQVICSVCDVEQEVAKVCSNCGVNMGEYYCEICKFYDDDTDKEQFHCEECGICRVGGRDNFFHCQKCGSCYAVDLRNNHSCVENSMKSHCPVCYEYLFDSIKGTTIMKCGHTMHMECFREMAAHQYRCPVCLKSIFNMSEDWRNLDLEIEAVPMPQEYKTEVSILCNDCNTTSEVSFHVLGHKCRQCGSYNTRRISTPEHK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1403 268 Gene3D - 226 266 - -
Lele08g1403 268 ProSiteProfiles Zinc finger CHY-type profile. 15 90 IPR008913 GO:0008270
Lele08g1403 268 SUPERFAMILY Zinc hairpin stack 93 150 IPR037275 -
Lele08g1403 268 SUPERFAMILY RING/U-box 154 206 - -
Lele08g1403 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 200 IPR013083 -
Lele08g1403 268 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
Lele08g1403 268 Pfam Zinc-ribbon 203 260 IPR039512 -
Lele08g1403 268 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 20 266 - -
Lele08g1403 268 Pfam Ring finger domain 156 198 IPR001841 -
Lele08g1403 268 SMART ring_2 157 198 IPR001841 -
Lele08g1403 268 Pfam CHY zinc finger 22 102 IPR008913 GO:0008270
Lele08g1403 268 SUPERFAMILY CHY zinc finger-like 20 91 IPR037274 GO:0008270
Lele08g1403 268 ProSiteProfiles Zinc finger CTCHY-type profile. 92 156 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1403 Lele-ChrLele08 8982020 8985242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1403 22 264 C2H2 Transcription Factor Family AT3G18290 42.000 4.94e-56 192