Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele08g1397 | ATGCCAGGAGTTTCAGGAGGAGGTGTGGCCATGACTTCTATATTGAACTCCATTCTTGGATCCTCTGAAGATGGTTCTATAGATTCCATCACACTATTTGTTGTTCTCCTGCTTACTTGTGTTGTGATTGGACATCTTCTGGAAACGAGCCGGTGGATGACTGAGTCACTCATCGCATTATTCATTGGCCTTTTAAGTGGAACCATCATTCTACTAACATCTAAGGGGAAAAGTTCACACATTTTAGTATTTGATGAGGAACTTTTTTTCATATATCTTCTTCCACCTATTATATTTAATGCAGGGTTCCAGGTGAAAAGGAAGCAATTTTTTGACAACTTCATCCCAATATTTTTGTATGGTGTTTTTGGGAGTTTGATGTCATTTATCATCATATCACTAGGTGCAAATCAATTATTTAAAGGATTAGACATTGGTGTATTGGATCTTGGGGATTATTTAGCACTTGGAGCAATATTTTCAGCCACAGATTCGGTCTGCACATTGCAGGTGCTAGATCAGGATGAGACGCCCCATCTGTACAGTTTAGTTTTTGGTGAAGGCGTAGTCAATGATGCAACATCAGTGGTTCTTTTCAATGCAATTCTAAGACTTGACCTCTCCCATATCACCTCGGCCAATATCTGGCAGTTTGTTGTCCATTTCGGATATTTATTCATGACAAGCGCTGTCCTTGGAGTAGGGGTTGGCTTGCTTAGTGCAATCATTATAAAGAAGTTGTATTTTGACAGGCACTCTACAGATGGAGAAATTGCTCTGATGATGCTGATGGCTTATTTATCTTATATGTTGTCTGAACTCTGTAATTTAAGTGGGATCCTCACCGTATTCCTTTGTGGGATTGTCATGTCACACTACACGTGGCATGGTATTTCTGATTGTTCTAAAGTTACAAGCAGGCATGCTTTTGCAACTTTCTCATTTCTCGCCGAGATTTTTATCTTCGTATATGTTGGCATGGATGCCTTGGACATCGAGAAATGGAAATTTGCCAGCCAGAGTCCTTCTACATTAGTTGGGGCAAGTGGGATCCTGTTAGGCTTGGTTCTGCTCGGAAGGGCGGCTTTCGTGTATCCCCTGTCAGCTCTAGCCAATTTATTTAGGAAGTTTGACGATGACAAGATTACATTTAAGCAGATGGTTGTGATATGGTGGGCTGGGCTCATGCGAGGTGCTGTATCTGTGGCACTTGCATACAATAAGTTTACTAGATCAGGACATACTCAACTGCGGGGAAATGCCATCTTGATTACCAGCACCATCATAGTTGTTCTCTTAACTAATGTGGTTGGGGGATTACTGACTAAGCCTCTGATGAGGCTACTGTTGAATCCCTCTAAGGATGTTAAGGGCTTGGCTCAGCCATTACTCGATGACGGGAATGATTCGGAATCTAACGTAGACATCGGTAATCCTCTTGATTCCAATCATATTGTTCATCACTATTGGCGAATCTTCGATGATTCATTTATGCGCCCTGTTTTTGGAGGGAGAGGAGTTGCTCCTGTTGTTCCCAGTTCTGAAACAGATGTGATTCTGTGTTAG | 1566 | 0.417 | MPGVSGGGVAMTSILNSILGSSEDGSIDSITLFVVLLLTCVVIGHLLETSRWMTESLIALFIGLLSGTIILLTSKGKSSHILVFDEELFFIYLLPPIIFNAGFQVKRKQFFDNFIPIFLYGVFGSLMSFIIISLGANQLFKGLDIGVLDLGDYLALGAIFSATDSVCTLQVLDQDETPHLYSLVFGEGVVNDATSVVLFNAILRLDLSHITSANIWQFVVHFGYLFMTSAVLGVGVGLLSAIIIKKLYFDRHSTDGEIALMMLMAYLSYMLSELCNLSGILTVFLCGIVMSHYTWHGISDCSKVTSRHAFATFSFLAEIFIFVYVGMDALDIEKWKFASQSPSTLVGASGILLGLVLLGRAAFVYPLSALANLFRKFDDDKITFKQMVVIWWAGLMRGAVSVALAYNKFTRSGHTQLRGNAILITSTIIVVLLTNVVGGLLTKPLMRLLLNPSKDVKGLAQPLLDDGNDSESNVDIGNPLDSNHIVHHYWRIFDDSFMRPVFGGRGVAPVVPSSETDVILC | 521 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele08g1397 | 521 | PRINTS | Na+/H+ exchanger signature | 157 | 167 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Lele08g1397 | 521 | PRINTS | Na+/H+ exchanger signature | 102 | 116 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Lele08g1397 | 521 | PRINTS | Na+/H+ exchanger signature | 117 | 125 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Lele08g1397 | 521 | PRINTS | Na+/H+ exchanger signature | 88 | 99 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Lele08g1397 | 521 | Gene3D | - | 150 | 201 | - | - | |
| Lele08g1397 | 521 | Pfam | Sodium/hydrogen exchanger family | 33 | 447 | IPR006153 | GO:0006812|GO:0015299|GO:0016020|GO:0055085 | |
| Lele08g1397 | 521 | TIGRFAM | b_cpa1: sodium/hydrogen exchanger 3 | 32 | 455 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085 | |
| Lele08g1397 | 521 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 22 | 502 | IPR018422 | GO:0006812|GO:0015299|GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele08g1397 | Lele-ChrLele08 | 8945643 | 8953306 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele08g1397 | 10 | 517 | Antiporters | AT3G05030 | 62.664 | 0.0 | 659 |