Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1392 ATGAGGCAACAGAGGAGGATGAACGGTGTAGCTGCTGCGAACAAAGGATCTCCAGCGAATAACTCCCCCAACAATGGTGACAGAGCTCCGACATTTAACTACGGCGACCTCTCCCTGGAAGGCGAGAAAGATGTTTTGAATTATTCACTGTGGAAAGCATGCGCCGGCGCTTCTGTCATTGTTCCTCGCACTGGCGACTTGGTCTTCTATTTTCCTCAGGGCCACCTGGAACAGGTGGAGGACTTTACTCGGCAGGATGGTCACATGGAACTTCCTGCTTGTGATTTGCCTTCTAAAATCCTTTGCAGGGTCATGGGTGTTCAACTAAAGGCTGAAGCCAACACAGACGAGGTTTTCGCTCAAATTACTTTAATCCCTGAATCAAAGCTAGATGAAGTTAGTTCAGATGATAAAGGGTCTCGGCTGAAACCCAGAACTACTTCCAAGTGCTTCAGTAAGACGCTCACCCTATCAGATACAGGTGCACATGGTGGATTCTCCATTCCTAAGAAACTTGCCGAGGAATGCTTCCCGCCTCTGGATATGTCTCAGCAACCACCTGGACAAGAGCTCATTGCAAAGGACTTGCATGGTACCAAATGGAATTTTCGCCACACCTATCGGGGTCAGCCGAAACGACACCTGCTTACGGGTGGCTGGAGTTCGTTCCTCCATTCAAAAAAGCTTGAACCCGGAGATACATGCATTTTTCTTTGCGGAGAGAATGGAGAAATTGGGATTGGGATCCGTCGAGCACTTAAACAACACAACAAAGCATCTTCATCCACATGCGTGATATCTGGCCATAGCATGCAACTCGGGATATTGGCCACTGCTTCTTATGCTGTTGCTACTGGATCCATGTTTACTGTCTACTACCGTCCTTGGACTTGTCCCTCTGAATTCATTGTTCCACTGGGTCACTACATGAAGCCAAATAAAGTGAAATATTCATGTGGGATGAAGATACAAATGCAGTTTGAAGTCGAAGAATCTACAAGGAGATATGCAGGAACTATAATAGGTATTGATGATATTGATGGCATGAAGTGGCCTGCTTCAGAATGGAGATGTCTCAAGGTGAAATGGGATGCCAAGCTTGATATAGATTTGCGTCCTGAAAGGGTGTGTCCATGGAACATTGAGCCCTTGGAATCTTCCGGGAAGAACATTCCTAATCTAGCCCCACCAAAGAGGCCACGTCTACTCGGCCCATTAATGTCTGGATTATTCGATCTTACCAAGGATGACATCGATCTGAACTCAGCCAACAATGCATCTCAGAGATGTGAAAGGGACTTACAAGGTCAAGATTACAAAGATGTAGGCTTCCAACAATATGACTCACAGTTCAGGACGAAGAATCAGCCACACTTTCAACTGCAAATCCCTCCTTGCCATTCTCTTGGTGGCTCAGCATCATTTCCAGATGATGACATTTCAACTTCAAGCCCCCACATACAGCCCCCAATCCCAACCACTTATGACGCATGTCATAATGTCCCCGTCACCAAGTACCTTTCACTCTCAAATGTGAATTCCAATGATTCTGAATCCCAGGGATGGCGGGCGTCTGGATCGAGGGATGAGAATGATAGTAAAACTGAATACAAGCTTTTCGGGATAAGCTTAAACCACCCGGAGCTCCCTTCACCACAAGTTGCTGCTTCTAGCAGTACTTCAACCCTTCATGTTCCTCCAATGTCTCAGTCAATCGTTTCTGCGACTATCCCAGTTTCCAAACCATCAAAGAGTATTTCAGGTGTTGCGTCGCAGAAAAAATGCAAGAAATGTAGCGCTGTTAATAGCAGGACTTGCACAAAGGTGCTTAAGCGTGGAAGTGCACTTGGTAGATCAATTGACCTCTCGCGTATTTCTGGATACGAAGACCTCATTTCTGAACTGGACTTGATGTTTGATTTCAAAGGAAGCTTAATAAATGGAAGCAGCGGATGGCATGTGGTCCCCATGGATGATGACGGGGATATGATGCTGTTTGGAGATTTCCCCTGGCAGGATTTCCAGTCCATGGTGCAAAAGATGATCATTTGTCCAAAGGAGGACTCCAGCAACCGGAGTGCTATTGCTAGCACAGCAGACTCAACAACCTTGTAA 2115 0.4629 MRQQRRMNGVAAANKGSPANNSPNNGDRAPTFNYGDLSLEGEKDVLNYSLWKACAGASVIVPRTGDLVFYFPQGHLEQVEDFTRQDGHMELPACDLPSKILCRVMGVQLKAEANTDEVFAQITLIPESKLDEVSSDDKGSRLKPRTTSKCFSKTLTLSDTGAHGGFSIPKKLAEECFPPLDMSQQPPGQELIAKDLHGTKWNFRHTYRGQPKRHLLTGGWSSFLHSKKLEPGDTCIFLCGENGEIGIGIRRALKQHNKASSSTCVISGHSMQLGILATASYAVATGSMFTVYYRPWTCPSEFIVPLGHYMKPNKVKYSCGMKIQMQFEVEESTRRYAGTIIGIDDIDGMKWPASEWRCLKVKWDAKLDIDLRPERVCPWNIEPLESSGKNIPNLAPPKRPRLLGPLMSGLFDLTKDDIDLNSANNASQRCERDLQGQDYKDVGFQQYDSQFRTKNQPHFQLQIPPCHSLGGSASFPDDDISTSSPHIQPPIPTTYDACHNVPVTKYLSLSNVNSNDSESQGWRASGSRDENDSKTEYKLFGISLNHPELPSPQVAASSSTSTLHVPPMSQSIVSATIPVSKPSKSISGVASQKKCKKCSAVNSRTCTKVLKRGSALGRSIDLSRISGYEDLISELDLMFDFKGSLINGSSGWHVVPMDDDGDMMLFGDFPWQDFQSMVQKMIICPKEDSSNRSAIASTADSTTL 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1392 704 Pfam B3 DNA binding domain 151 251 IPR003340 GO:0003677
Lele08g1392 704 Gene3D - 149 253 IPR015300 -
Lele08g1392 704 SMART B3_2 151 253 IPR003340 GO:0003677
Lele08g1392 704 MobiDBLite consensus disorder prediction 14 29 - -
Lele08g1392 704 Gene3D - 316 390 - -
Lele08g1392 704 Pfam AUX/IAA family 592 684 IPR033389 -
Lele08g1392 704 SUPERFAMILY CAD & PB1 domains 605 680 - -
Lele08g1392 704 CDD B3_DNA 149 251 IPR003340 GO:0003677
Lele08g1392 704 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 44 689 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele08g1392 704 ProSiteProfiles PB1 domain profile. 604 686 IPR000270 GO:0005515
Lele08g1392 704 SUPERFAMILY DNA-binding pseudobarrel domain 146 279 IPR015300 -
Lele08g1392 704 MobiDBLite consensus disorder prediction 512 532 - -
Lele08g1392 704 Gene3D - 600 692 - -
Lele08g1392 704 MobiDBLite consensus disorder prediction 1 29 - -
Lele08g1392 704 FunFam Auxin response factor 316 388 - -
Lele08g1392 704 FunFam Auxin response factor 149 253 - -
Lele08g1392 704 ProSiteProfiles B3 DNA-binding domain profile. 151 253 IPR003340 GO:0003677
Lele08g1392 704 Pfam Auxin response factor 279 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1392 Lele-ChrLele08 8913840 8919323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1392 44 688 B3 DNA Binding Superfamily AT4G23980 39.157 2.73e-136 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele08g1392 AUX_IAA 9.6e-07 CL0072