Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1387 ATGGCGGAGGGGAAGGAGGAGAGAAAATCTAGCGAGGAGAGTGTGAAATTGTTCGTGGGTCAAGTGCCCAAGCATGTGACGGAGGCCGAGCTTCTTGCAATGTTCAAGGAGTTTGCTCTGGTGGACGAGGTCAACATCATCAAGGACAAAGTCACCCGCTCCTCTCGAGGTTGTTGCTTCGTGATTTGTCCGTCGAGGCAAGAGGCAGACAAGGCGGTCAATGCGTGTCATAACAAGAAGACACTACCTGGGGCATTGAGTCCATTGCAAGTGAAGTATGCGGATGGCGAGTTGGAAAGACTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAATGTTTCTGAAGCTGAAGTCTCCGTTCTTTTCTCTAAGTATGGAACCATAAAGGATTTACAGATTCTGAGAGGTTCTCAGCAAACAAGTAAAGGCTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCCTTGCTGCTCTGGAGGCAATCAATGGAAAACATAAGATGGAGGGTTCAAGCGTTCCTTTGGTGGTCAAATGGGCGGATACAGAAAAGGAAAGACAAGCTCGGAGGGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTGCCACATAGTGATTCTCAGCATCAGTCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCACAATATAATGGATACGGCTATCAGGCTCATGGGGGTTATGGGCTCATGCCATACCGCTTGCCACCATTGCAGAATCAACCTGGTTACCATACTATGATGCCTCACATGAATCAAGGAAATGCATTGGGACCTGAACTTGGTCCCAATATGAACCCTAGAAATTATCCTGTGCCTCCTGGAAGTTACTATGGTTCTTACCCTGCAGTCCCAGGTATGCAGCATCCAATGGCATATACTGGAGGAGTGATAAGTCCTAGGCCTGTGAGTAACTCTCCCGGTTCAGTTTCACCTGCAGGTGGAAGTGGCAACTCTGCTTCATCTTCAGGTGCCAATAAAAATTCCAGTAGTCAGGTTGAAGGACCACCTGGTGCCAATCTCTTTATTTATCATATACCTCCTGAATATGGAGATCAAGAACTGGCAAATGCGTTTCAGTCGTTTGGTAGGGTTTTGAGTGCTAAAGTGTTTGTTGATAAAGCAACTGGTGTAAGCAAATGTTTCGGGTTTGTAAGTTATGACTCTCCAGAAGCTGCACAGGCCGCCATTAGTATGATGAATGGATTCCAATTAAGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGACAAGCAGAATAAGCCTTACTGA 1293 0.4586 MAEGKEERKSSEESVKLFVGQVPKHVTEAELLAMFKEFALVDEVNIIKDKVTRSSRGCCFVICPSRQEADKAVNACHNKKTLPGALSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSVLFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHSDSQHQSLFGALPMGYVPQYNGYGYQAHGGYGLMPYRLPPLQNQPGYHTMMPHMNQGNALGPELGPNMNPRNYPVPPGSYYGSYPAVPGMQHPMAYTGGVISPRPVSNSPGSVSPAGGSGNSASSSGANKNSSSQVEGPPGANLFIYHIPPEYGDQELANAFQSFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQAAISMMNGFQLSGKKLKVQLKRDKQNKPY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1387 430 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Lele08g1387 430 Gene3D - 2 99 IPR012677 -
Lele08g1387 430 CDD RRM1_2_CELF1-6_like 16 92 - -
Lele08g1387 430 MobiDBLite consensus disorder prediction 305 343 - -
Lele08g1387 430 MobiDBLite consensus disorder prediction 185 209 - -
Lele08g1387 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Lele08g1387 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Lele08g1387 430 Gene3D - 322 429 IPR012677 -
Lele08g1387 430 Gene3D - 100 192 IPR012677 -
Lele08g1387 430 FunFam RNA-binding protein BRN1 313 423 - -
Lele08g1387 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Lele08g1387 430 SUPERFAMILY RNA-binding domain, RBD 103 427 IPR035979 GO:0003676
Lele08g1387 430 SMART rrm1_1 16 92 IPR000504 GO:0003723
Lele08g1387 430 SMART rrm1_1 104 179 IPR000504 GO:0003723
Lele08g1387 430 SMART rrm1_1 347 420 IPR000504 GO:0003723
Lele08g1387 430 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Lele08g1387 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Lele08g1387 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Lele08g1387 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Lele08g1387 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Lele08g1387 430 MobiDBLite consensus disorder prediction 306 343 - -
Lele08g1387 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Lele08g1387 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Lele08g1387 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 80 IPR000504 GO:0003723
Lele08g1387 430 FunFam RNA-binding protein BRN1 2 99 - -
Lele08g1387 430 PANTHER RNA BINDING PROTEIN 14 424 - -
Lele08g1387 430 CDD RRM1_2_CELF1-6_like 104 179 - -
Lele08g1387 430 MobiDBLite consensus disorder prediction 193 209 - -
Lele08g1387 430 CDD RRM3_CELF1-6 348 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1387 Lele-ChrLele08 8883548 8888115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1387 328 428 Eukaryotic Initiation Factors Gene Family AT2G23350 32.673 2.45e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1387 08 8883548 8888115 Lele08g1387 08 8883548 8888115 ECH
Lele05g1542 05 9882578 9887143 Lele08g1387 08 8883548 8888115 hybridization
Lele06g1390 06 8941960 8946549 Lele08g1387 08 8883548 8888115 hybridization