Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1354 ATGACCATCTCTATGGTAATGTGCAGACTAACACAATCCCTAATAAATATTTCTTCTGTTAGCCCAAAAATAAACGTTACCACTCTTTCGCGGCAGAAGGATAAGGTTGTGTTGGTGATGGGGGCCACCGGCGCCGGAAAGTCCAGGCTCTCCATCGACCTCGCCACCCTTTTTCCTGCGGAGATCATCAACTCTGATAAAATACAAGTGTATGAAGGACTCGACACAGTGACAAACAAGATCACCGAGGAAGAACAACGTGGTGTTCCTCACCATTTACTAGGAACACAGAATCCAAACTCAGAATTCACGGCCAGCAATTTCTGTGGCATGGCTTCCCTTGCCATTGAGACAATTAGGGGTCGTGGAAAGCTTCCGATCATCGTCGGAGGCTCGAATTCACTCCTGGAGGCTTTAATCGACGAGGACGACTATAAATTCCGATCAAGGTACGATTTCTGCTGCCTGTGGGTAGACGTGGGCATGCCCGTTCTCCATTCGTACGTGGCAGAACGGGTGGATCAGATGTTCAAGAAAGGAATGGTGAACGAATTGAGGCCGTTTTACAATCCAAAAGGGGACTATTCACGAGGGATCAGGAAGGCAATCGGAGTTCCGGAATTCGATAAATATTTTCGAAGGGAAGCACAGGCTGATGAGGAAACGAGGCAGAGGCTGTTGGAGGAGGCGTTGAGGGAGGTGAAGGAGAACACGAGGAAATTGGCGGGAAAACAGCTGGGGAAGATCCAGAGCCTGAGGAACGTGAAGAGATGGAAGATGCAGCGCGTGGACGCGACGTCGGTATTCCAGAAGCGCGGGGATGAAGAAGAGGCGAATGAGGAGTGGAGGAAGGTGGTGGCGGAGCCAAGTGCGATGATCGTCGCTCAGTTCCTTCGCAGCTTCACAACGACGAAGAGGGGTGTGAATGCGGGTCTAAGATTGGCGCCGCTGGAGAGCGCCATTGCTTCGTCTTGGCATCTTCGATCGCTGGGGGCACACTCATATGGCACAGTGAAAATGAAAATGGCGGTGCCCATGCCCGGTGATGGTGATGGTGATGGTGCCCATGGTGATGGCCGTGTTCTTCGTCATCGTCAGATTGTGCAAGTAAACTTGGAGGACTTCTCAAAAATGGCAGTGATGAGCAAGCATAGCTTGCGAGCGAAAACTAAGTTGCACAGAGTGGGCGAGGATCGGGTGGAGACAACGCAATGA 1215 0.5128 MTISMVMCRLTQSLINISSVSPKINVTTLSRQKDKVVLVMGATGAGKSRLSIDLATLFPAEIINSDKIQVYEGLDTVTNKITEEEQRGVPHHLLGTQNPNSEFTASNFCGMASLAIETIRGRGKLPIIVGGSNSLLEALIDEDDYKFRSRYDFCCLWVDVGMPVLHSYVAERVDQMFKKGMVNELRPFYNPKGDYSRGIRKAIGVPEFDKYFRREAQADEETRQRLLEEALREVKENTRKLAGKQLGKIQSLRNVKRWKMQRVDATSVFQKRGDEEEANEEWRKVVAEPSAMIVAQFLRSFTTTKRGVNAGLRLAPLESAIASSWHLRSLGAHSYGTVKMKMAVPMPGDGDGDGAHGDGRVLRHRQIVQVNLEDFSKMAVMSKHSLRAKTKLHRVGEDRVETTQ 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1354 404 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Lele08g1354 404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 144 IPR027417 -
Lele08g1354 404 FunFam Adenylate isopentenyltransferase 5, chloroplastic 162 260 - -
Lele08g1354 404 Gene3D - 33 298 IPR027417 -
Lele08g1354 404 Coils Coil 217 237 - -
Lele08g1354 404 Pfam IPP transferase 147 246 - -
Lele08g1354 404 Pfam IPP transferase 69 142 - -
Lele08g1354 404 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 298 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1354 Lele-ChrLele08 8650102 8653633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1354 149 311 C2H2 Transcription Factor Family AT2G27760 29.474 2.51e-19 87.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1354 08 8650102 8653633 Lele13g2004 13 27377195 27380781 CCT
Lele08g1354 08 8650102 8653633 Lele14g1939 14 25713330 25714109 CCT
Lele08g1354 08 8650102 8653633 Lele15g0401 15 2301949 2302728 CCT
Lele08g1354 08 8650102 8653633 Lele16g0423 16 2282576 2283877 CCT
Lele08g1354 08 8650102 8653633 Lele08g1354 08 8650102 8653633 ECH
Lele05g1503 05 9628194 9629195 Lele08g1354 08 8650102 8653633 hybridization
Lele06g1357 06 8706542 8707600 Lele08g1354 08 8650102 8653633 hybridization