Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1350 ATGGCGAGCCACACGCAGGCTAGGCCTCCCACAACCACCAACGCTTGCTTCGCCCCATTACCTTCTCTCTTCCCCATTCTTGCTTCCTCACTCCTCGAGTCTCTCCACCTCTTCTTTCTGGCGATGATAGTTGCTGCTTCAATCCAGAATAGTGAAGAGAGGCGCAGGGATTTGAAAAGAAAGGTCCCACATGCGGACCGGTTGCAAGAGGATGGATCTTATAATAGTCTTCCTCCTGGTTGGTTGGACTGCCCACCGTATGGTCAAGAAATAGGATGCATAATCCCTTCCAAGGTTCCGCTTGGTGAATCCTTTGATGATATCATTCCAAGTCAAAAATATTCTCCCAAGCAAGCAATTTTTCAACAAAGACATTTAGGTAGAGAGATTGGTCTAGTGATTGATTTGACAAATACTACTCGTTACTACCCAATATCAGATTGGACCAAAGAAAAGATTCGTCATGCCAAGATAAGATGCAAAGGAAGAGATTCTGTGCCTGATGATGAATCTGTTAACAGATTTTGCAATGAAGTCCTGAATTTTCGCTCCCAAAGAACAAACAAATATATACTAGTGCATTGCACTCATGGGCACAATCGCACTGGTTATATGATTGTTCATTTTCTTGTGCGCACAGAATCAATTTCAGTCACTGAGGCAATATATAAATTTGCCACCGCACGTGACCCTGGAATTTACAAGCAGGATTATATTGACGCCTTGTACATGTTTTATCATGAAAGGAAGCCTGAAGAAGTTGTTTGTCCTCAAACTCCAGAGTGGAAGAAACTTTCTGATCCCGAGTTTCATGGCGCAGTTGACCCTGCTGTAGAAAATATTGGAGGTGTTCCTTTGCATGAGAATATCACAAGGAATGAAGTTTTGACAAACGATGATGTTTTGGGAGATCCTGTACCTTCAAATCAACTGCATTCAATGCGACTTGAGTGCTACCAACTGCTTAAGTTGGGCAAAGGGGGAAGAGGATCTTTGCAGTTTCCAGGATCACATCCTGTTTCCCTCAACAGGGACAATCTACAACTTTTAAGACAGCGGTATTACTATGCCACATGGAAAGCTGATGGGACACGGTATATGATGTTGATCACCTGTGATGGATGTTATTTGATTGACAGAAAATTTCATTTTCGGAAAATCCATATGCGGTTTCCATGCAGATATTTGAATGGGGGTACTCCTGAAAGGAATCACCACTACACATTACTTGATGGCGAGATGATAATTGACATGGATCCACATACACAAAAGCAAGAGAGAAGATACCTTATTTATGATCTGATGGCCATTAATCAAGTTTCTGTGACTGAGCTGCCTTTCTATGAACGTTGGAAATTGCTAGAGAAAGAAGTGATTGAGCCTCGTAACATGGAGCGTGAGGCTCTTTGCAAGAGTGCAAATCCTTATTATCGATATGACTTGGAGCCATTTAGTGTTAGGAGGAAGGGTTTTTGGTTACTGTCCACTGTTTCAAAGCTTCTCCATAAATTCATTCCGCAACTGTCCCATCCATCCGATGGTCTTGTGTTCCAGGGTTGGGATGATCCTTACGTCCCTCGCACACACGAAGGTCTTCTGAAGTGGAAATACCCTGAAATGAACTCAGTTGATTTCCTCTTTGAGTTGGGAGCATCTGGTCGTTGGCTGCTCTTTCTTCATGAACGTGGAAAGAAGAAGTTGATGGAAGGGAATAGGGTTGTTTTTAAAGATGTATCAGATACATGTTCCTATTCAGGGAAAATCATTGAATGCTACTGGGATGCCGAGAAGAATCATTGGGTCTGTATGCGGATAAGGACTGACAAATCAACTCCAAATGAGATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGAAGTTGTATTGAATGAGATAAATGAGATCATACGCCTTCCCTTGTATGCAGACAGAATAGGAAGGGATATTAAGGCTCATCAACAGATGGTCTCTGCAAGGCGAAGGTGA 2004 0.4242 MASHTQARPPTTTNACFAPLPSLFPILASSLLESLHLFFLAMIVAASIQNSEERRRDLKRKVPHADRLQEDGSYNSLPPGWLDCPPYGQEIGCIIPSKVPLGESFDDIIPSQKYSPKQAIFQQRHLGREIGLVIDLTNTTRYYPISDWTKEKIRHAKIRCKGRDSVPDDESVNRFCNEVLNFRSQRTNKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAIYKFATARDPGIYKQDYIDALYMFYHERKPEEVVCPQTPEWKKLSDPEFHGAVDPAVENIGGVPLHENITRNEVLTNDDVLGDPVPSNQLHSMRLECYQLLKLGKGGRGSLQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITCDGCYLIDRKFHFRKIHMRFPCRYLNGGTPERNHHYTLLDGEMIIDMDPHTQKQERRYLIYDLMAINQVSVTELPFYERWKLLEKEVIEPRNMEREALCKSANPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHPSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFELGASGRWLLFLHERGKKKLMEGNRVVFKDVSDTCSYSGKIIECYWDAEKNHWVCMRIRTDKSTPNEINTYRKVMRSIKDNITEEVVLNEINEIIRLPLYADRIGRDIKAHQQMVSARRR 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1350 667 Gene3D - 537 629 IPR012340 -
Lele08g1350 667 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 240 IPR000387 GO:0016311|GO:0016791
Lele08g1350 667 CDD Adenylation_mRNA_capping 309 537 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lele08g1350 667 ProSitePatterns Tyrosine specific protein phosphatases active site. 193 203 IPR016130 GO:0016311|GO:0016791
Lele08g1350 667 Pfam mRNA capping enzyme, catalytic domain 338 536 IPR001339 GO:0004484|GO:0005524|GO:0006370
Lele08g1350 667 CDD RNA_5'-triphosphatase 80 244 - -
Lele08g1350 667 PANTHER MRNA-CAPPING ENZYME 75 648 - -
Lele08g1350 667 Pfam mRNA capping enzyme, C-terminal domain 541 634 IPR013846 -
Lele08g1350 667 SUPERFAMILY Nucleic acid-binding proteins 539 652 IPR012340 -
Lele08g1350 667 FunFam mRNA capping enzyme, putative 297 534 - -
Lele08g1350 667 FunFam mRNA capping enzyme family protein 535 644 - -
Lele08g1350 667 FunFam mRNA capping enzyme family protein 73 280 - -
Lele08g1350 667 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 302 537 - -
Lele08g1350 667 Gene3D DNA ligase/mRNA capping enzyme 297 536 - -
Lele08g1350 667 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 77 263 IPR029021 -
Lele08g1350 667 Gene3D Protein tyrosine phosphatase superfamily 50 269 IPR029021 -
Lele08g1350 667 Pfam Dual specificity phosphatase, catalytic domain 128 246 IPR000340 GO:0008138|GO:0016311
Lele08g1350 667 PIRSF mRNA_capping_HCE 64 667 IPR017074 GO:0004484|GO:0006370|GO:0140818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1350 Lele-ChrLele08 8626170 8634218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1350 77 667 Protein tyrosine phosphatase (PTP) family AT3G09100 63.561 0.0 773
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1500 05 9607807 9614990 Lele08g1350 08 8626170 8634218 hybridization
Lele06g1355 06 8681682 8690240 Lele08g1350 08 8626170 8634218 hybridization