Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1335 ATGGATCAGCCTCCATCCTCTGCGGTTAGACGCAGCTTGAAGCGCAAGCTCGAACAAGAATTCGCGGACGAAGGTGCAGATCAACCAACGGTCGATCGTAAAGTGTTGGTTCTTGATCCTCAAAACTCTCGTCACGATCTTTTGAGTGAAGTTGTGTCACAAGTCACTATTCTCAACTCCAGTGTCTCATCGTCTCAGTCGGATCGCCTCGCGGCCAAGCGCGCTGTTCAGGTTCTACGTGAACTAGCAAAGAACGAGGAAATCGTGGATAGTATAGTGGACAGCGGAGCCGTTCCTGCTTTGTTAAGGCATCTGAAAGCACCAGAACCAGTTAGAGAAGGTGATGGTGTTTCCAAACCTTACGAGCATGAGGTGGAAAAGGGATGTGCCTACGTCCTTGGGCTTCTTGCTGTTAAACCAGAGCATCAACAACTTATTGTCGATGCTGGAGCTTTGCCCTGTCTTATGGATTTTGTAAAGAGGCACAAGTCCTGTGGCCATTCACGTGCAATTACTGGCCTTATAAAGAGAGCAGCTGATGCCATCACAAACCTTGCTCACGAAAATAGCAGCATTAAAACCCGTGTTAGGATGGAAGGTGGTATCCCTCCTCTCGTTGAATTGCTTAAATTGGATGATGCAAAGGTGCAAAGGGCAGCTGCAGGGGCCTTACGAACTCTTGCATTTAAAAATGACGAGAACAAAAACCAGATTGTTGGATGCAATGCACTGCCTACTCTTGTACTAATGCTTGGATCAGAGGATGCTGCAATACATTCTGAAGCAGTTGGCGTGATTGGAAATCTGGTCCACTCTTCTCCAAACATAAAGAGGGAAGTTCTTCTTGCTGGTGCTCTACAACCTGTAATTGGATTACTTAGATCTTGCTGTTCGGAGAGTCAAAGAGAAGCAGCTCTTTTAATTGGTCAATTCGCTGCGACAGATTCTGATTGCAAGGTTCATATTGCTCAAAGAGGAGCTATCCAGCCACTGATTGACATGCTTAAATCTCCAGATGCACAGCTTCGGGAAATGTCCGCTTTTGCGCTTGGGAGACTGGCTCAGGACACACACAATCAAGCTGGTATTGCTCATAATGGAGGTATAGAGCCTCTACTCAACCTTCTTTGCTCCAAGAATGGACCTCTCCAACATAATGCGGCCTTTGCTCTATATGGTCTTGCGGATAATGAGGACAATGTTGCGGATATTATTAAGGTTGGTGGTGTTCAGAAACTACAGGATGGAGATTTCAAAGTTCAACCTACTAAAGAGTGTGTAGGAAAGACAATGAAAAGATTAGAGGAGAAAATGCAAGGACGAGTGTTGGAACAACTGTTGTATCTTTTGCGTTTTGGAGAAAAAGCTGTTCAAAGACGCGTGGCTCTGGCCCTTGCTCATTTATGTTCCGCTGATGATCGGAAATTTATTTTTGTTGACAGCAACGGACTTGAGTTCCTGTTGGATCTTCTAGAATCTACAAACCTCAAACAGAAACGTGATGCTTCAATGGCACTTCACTCGTTGGCTGTCAGAACCACATCTGTCGCTCCCTTCGATGCTGATCCTCCATCCCCGACTCCCCAGGTATACTTAGGCGAGCAATATGTAAACAATCCTACACTTTCTGATGTCACGTTTTTAGTTGAAGGCAAACGGTTCTATGCTCACCGAATTTGTTTACTTGCTTCCTCTGATGCATTTCGAGCAATGTTTGATGGTGGTTACCGGGAAAGGGAAGCTAAAGATGTTGAGATTCCTAACATAAAATGGGTTGTCTTTGAGTTGATGATGAGATTTATTTACACAGGAACCGTAGATGTCAATTTGGATATTGCTCAGGATCTCTTAAGAGCTGCCGATCAGTATCTTCTGGATGGTCTTAAGCGACACTGTGAATGTGCAATTTCTCAGGATGTTTCCGTGGAAAATGTTTCTCTTATGTACGAGTTATCGGAGGCATTTAACGCCTCGTCATTGAGACAAGCGTGTATGCTATTTTTGTTGGAGCAATTTGACAAACTGAGCACCAAACCATGGTATAGCCGCATGATGCGTCGTATCGTCCCAGATATACGTGAATATGTCAGAAATTTACTTACCAAGTCCATATAA 2115 0.4454 MDQPPSSAVRRSLKRKLEQEFADEGADQPTVDRKVLVLDPQNSRHDLLSEVVSQVTILNSSVSSSQSDRLAAKRAVQVLRELAKNEEIVDSIVDSGAVPALLRHLKAPEPVREGDGVSKPYEHEVEKGCAYVLGLLAVKPEHQQLIVDAGALPCLMDFVKRHKSCGHSRAITGLIKRAADAITNLAHENSSIKTRVRMEGGIPPLVELLKLDDAKVQRAAAGALRTLAFKNDENKNQIVGCNALPTLVLMLGSEDAAIHSEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLLRSCCSESQREAALLIGQFAATDSDCKVHIAQRGAIQPLIDMLKSPDAQLREMSAFALGRLAQDTHNQAGIAHNGGIEPLLNLLCSKNGPLQHNAAFALYGLADNEDNVADIIKVGGVQKLQDGDFKVQPTKECVGKTMKRLEEKMQGRVLEQLLYLLRFGEKAVQRRVALALAHLCSADDRKFIFVDSNGLEFLLDLLESTNLKQKRDASMALHSLAVRTTSVAPFDADPPSPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREREAKDVEIPNIKWVVFELMMRFIYTGTVDVNLDIAQDLLRAADQYLLDGLKRHCECAISQDVSVENVSLMYELSEAFNASSLRQACMLFLLEQFDKLSTKPWYSRMMRRIVPDIREYVRNLLTKSI 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1335 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Lele08g1335 704 Gene3D - 424 517 IPR011989 -
Lele08g1335 704 Pfam Armadillo/beta-catenin-like repeat 315 354 IPR000225 GO:0005515
Lele08g1335 704 Pfam Armadillo/beta-catenin-like repeat 231 270 IPR000225 GO:0005515
Lele08g1335 704 Pfam Armadillo/beta-catenin-like repeat 196 228 IPR000225 GO:0005515
Lele08g1335 704 Pfam BTB/POZ domain 536 638 IPR000210 GO:0005515
Lele08g1335 704 SMART arm_5 356 396 IPR000225 GO:0005515
Lele08g1335 704 SMART arm_5 471 511 IPR000225 GO:0005515
Lele08g1335 704 SMART arm_5 85 138 IPR000225 GO:0005515
Lele08g1335 704 SMART arm_5 189 229 IPR000225 GO:0005515
Lele08g1335 704 SMART arm_5 315 355 IPR000225 GO:0005515
Lele08g1335 704 SMART arm_5 231 271 IPR000225 GO:0005515
Lele08g1335 704 SMART arm_5 273 313 IPR000225 GO:0005515
Lele08g1335 704 SMART arm_5 139 187 IPR000225 GO:0005515
Lele08g1335 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 368 IPR000225 GO:0005515
Lele08g1335 704 SUPERFAMILY POZ domain 534 636 IPR011333 -
Lele08g1335 704 SUPERFAMILY ARM repeat 68 413 IPR016024 -
Lele08g1335 704 Gene3D Potassium Channel Kv1.1; Chain A 534 678 IPR011333 -
Lele08g1335 704 ProSiteProfiles BTB domain profile. 543 610 IPR000210 GO:0005515
Lele08g1335 704 Gene3D - 279 422 IPR011989 -
Lele08g1335 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 200 235 IPR000225 GO:0005515
Lele08g1335 704 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 409 IPR000225 GO:0005515
Lele08g1335 704 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 703 IPR044282 -
Lele08g1335 704 SMART BTB_4 543 640 IPR000210 GO:0005515
Lele08g1335 704 Gene3D - 175 278 IPR011989 -
Lele08g1335 704 SUPERFAMILY ARM repeat 365 512 IPR016024 -
Lele08g1335 704 Gene3D - 49 174 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1335 Lele-ChrLele08 8526847 8531940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1335 189 413 U-box Gene Family AT5G67340 28.761 8.22e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele08g1335 BTB 1.2e-25 CL0033