Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1307 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTTCCTTTGGTTCTGCTCTGCTTGTGAGGCACAAGCATGAAAGGAAAAAGTATGTCCTCAAGAAGATCCGCCTTGCCCGTCAAACTGATAGAACCCGTAGATCTGCCCACCAGGAGATGGAGCTTATCTCTAGAGTACGAAATCCCTTTATAGTTGAATATAAAGATTCCTGGGTAGAAAAGGGTTGTTTCGTGTGCATTGTCATAGGCTATTGTGAAGGTGGAGACATGGCAGAAGCTATTAAAAAGTCTAGTGGTGTTCATTTTCCGGAAGAGAAACTTTGTAAATGGCTTGTTCAACTCTTGATGGCACTTGATTACTTGCATGCAAACCATATCCTTCATCGTGATGTCAAGTGTTCTAATATATTCTTGACAAAAGATCATGACATACGACTAGGTGATTTTGGTCTGGCTAAATTATTGACATCTGATGATCTTGCTTCCTCTGTTGTTGGGACTCCGAGTTACATGTGTCCTGAGCTTCTTGCTGATATACCCTATGGTTCAAAGTCAGATATCTGGTCTTTGGGCTGCTGTGTATATGAAATGTCTGCCCACAAGCCAGCTTTTAAAGCTTTTGATATGCAAGCATTAATTAACAAAATAAACAAGTCAATTGTGGCTCCTCTGCCAACCATGTATTCTGGCGCTTTTCGAGGGCTTGTCAAAAGTATGCTACGGAAAAATCCAGAGCTTAGACCAAGTGCTTCAGAGTTGCTAAATCATCCGCATCTTCAGCCCTACATTCTTAAAATTCACCTAAAATTAAACAGCCCCAGAAGAAGTACTTTTCCATTCCAGTGGCCTGAGTCAAACTACGTAAGGAGAACTCGGTTTGTGGAGCCAGACTCTGTTTCTACCCTTTCTGATAGAGATAAACGCTTGTCATTTAGCAATGACAGGGCCTTGAATCCCAGTATTTCTGGAACTGAAAAAGATTCTCAGTGTTCTACTCAAAATGGTCATGGATTTTCCACTCGTTCAAGGGACAAACTCTATGAACTATCTGTTGGTTGCGTCCGTGAAGAACTCATAGCTAACAAGTCAAAAGCCACCAAGTTCTCAACTGTTGGCAGTAATAATCCAAGATTGAGAACAGCTAAGGATTCTTTCACCCCCAGAAGGCAGACCACCCCATCAAAAATATTTCATGCTGGTTCAAAGCGGGATTCACTTCCGGCGGCTCATACTCCAGCAGGAAATTCTTCTCCACCATCACGCAGGGCATCCCTTCCGCTGCCTACGAGAGTCATGACCACAGAAACCTCTTATAGAGCCAAAGTGGGCCACCTCCGGAGTGTGGAATCTCCAGATGTTTCTGTTAATGCTCCACGAATTGACAAGATTGCTGAATTCCCTCTTGCATCTTCTGAGGAAGCTATCTTCGCGGTCCCCAGAAGGTCATCAACATCTGCCATGTGCTCTTCTAGTTCACCAATTGGTGCTGTTTGCACAATCACAAAGGATAAGTGCACTGTCCAGGTTGTGGACAAAGCCGTGGCTGCCCCTGCCAGCGTGAGTGATACTTATCCCGAATCTTCAGGCCCAGGATATAGAAGGGAATGCTCTGAGCATGTTACGGCTGATGTTTCAAGTCGTTCATCTGCAGAGTCACAACAACGTCGGTTTGACACCTCGTCTTACCAGCAACGTGCCGAGGCATTGGAGGGGTTGCTTGAGTTCAGTGCAAGACTCCTACAACAACAGAGGTTTGAAGAACTTGGAGTGTTGTTGAAGCCATTTGGACCTGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGACGAAGAGTTTTAAAGAAACCGTTGTCTAA 1854 0.4423 MEQYEILEQIGKGSFGSALLVRHKHERKKYVLKKIRLARQTDRTRRSAHQEMELISRVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKSSGVHFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDHDIRLGDFGLAKLLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMSAHKPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPSASELLNHPHLQPYILKIHLKLNSPRRSTFPFQWPESNYVRRTRFVEPDSVSTLSDRDKRLSFSNDRALNPSISGTEKDSQCSTQNGHGFSTRSRDKLYELSVGCVREELIANKSKATKFSTVGSNNPRLRTAKDSFTPRRQTTPSKIFHAGSKRDSLPAAHTPAGNSSPPSRRASLPLPTRVMTTETSYRAKVGHLRSVESPDVSVNAPRIDKIAEFPLASSEEAIFAVPRRSSTSAMCSSSSPIGAVCTITKDKCTVQVVDKAVAAPASVSDTYPESSGPGYRRECSEHVTADVSSRSSAESQQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1307 617 CDD STKc_Nek 3 258 - -
Lele08g1307 617 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Lele08g1307 617 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lele08g1307 617 MobiDBLite consensus disorder prediction 409 425 - -
Lele08g1307 617 MobiDBLite consensus disorder prediction 312 339 - -
Lele08g1307 617 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lele08g1307 617 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Lele08g1307 617 MobiDBLite consensus disorder prediction 309 339 - -
Lele08g1307 617 MobiDBLite consensus disorder prediction 541 557 - -
Lele08g1307 617 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g1307 617 MobiDBLite consensus disorder prediction 519 557 - -
Lele08g1307 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lele08g1307 617 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 573 - -
Lele08g1307 617 MobiDBLite consensus disorder prediction 367 425 - -
Lele08g1307 617 SUPERFAMILY Protein kinase-like (PK-like) 1 316 IPR011009 -
Lele08g1307 617 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g1307 617 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Lele08g1307 617 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g1307 617 MobiDBLite consensus disorder prediction 367 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1307 Lele-ChrLele08 8347585 8352161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1307 10 259 MAP Kinase Kinase Kinase AT1G53570 31.373 4.99e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lele08g1307 Pkinase 9.2e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1307 08 8347585 8352161 Lele08g1307 08 8347585 8352161 ECH
Lele05g1455 05 9336898 9345421 Lele08g1307 08 8347585 8352161 hybridization
Lele06g1312 06 8401124 8405766 Lele08g1307 08 8347585 8352161 hybridization