Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1299 ATGAATTATCTGTACACAGTAAAAGAAGAGTACTTGGAACCACCTTCATCTGAAGTAGGAGGTAAGCCAGCAATGGTTCTACCTCCCCAGCCAATACAGGGACTTCATGAAACAGGACCGCCTCCATTCCTCACCAAGACATTTGATATGGTGGACGACCCTTCCACCGATCACATAGTCTCGTGGAGCAGAAGTGGATCAAGTTTTTTTGTGTGGGATCCATGTTCTTTCTCTACCAATCTCCTTCCTAGATTCTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAATTGAACACTTATGGTTTTAGAAAAATTGATTCAGACAGATGGGAATTTTCAAACGGAGAATTCATCAGAGGACACAAGCATCTACTGAGGAACATACGAAGAAGGAGAGCACCTTCTCAGGTTACTTCCCAAGTACCAGGTCAATGTGTTGAAGTTGGCGGGTTTGGAGTAGAAGAAGAAATTCTACGTTTAAGGCGTGACAAGCAAGTGTTAATGATGGAGCTTGTGAAGCTTAGACAGCAGCAACAGAACACCAGAGCCTACCTTCAGGAGATGGAACAGAGGTTACAAGGCACAGAAATGAAGCAGGAACAAATGATGGCTTTCTTAGCTAGAGCGTTGAAAAATCCATCTTTTCTCCACCAACTAATCCAACAGAATAAGACAAAGGAACTGGAAGAAGCCATGACTAGAAAAAGAAGAAGGTCAATTGAGCAAGGACGGATTGATGTTGCAGAATCAAACAGTGAAAGTGAGGGAAGGAATAATCCTGTTAAAGTTGAAGTGTCTGAGCTTGAAGTTCTAGCTATGGAAATGCAAGGTCTTGGTAGGGGTAAGAGAGAACAGGAAGCACTTGAATCTCCAGAGGGGCTAGACAGAGAACTTGACGAAGGATTCTGGGAAGAGTTTTTTAGTGAAAATGTTGTGGGTGAACTAGAAATTCCAAGCGATGAAGGTGAAGGCGAAGATGAAGATGTAGATATCAACGTATTGGCCAGGCGCTTAGGTTACATTGGTTCAAGTAGCTTGAAGCCGCTGCTGCTTCGGCAAGAACCTGTGGCAGCGTTAGCTGTCATTTTTAATCTCAAGATTATATCAGAAGCCGGGGAATATTGGACAAGAAGTATCTGA 1143 0.4313 MNYLYTVKEEYLEPPSSEVGGKPAMVLPPQPIQGLHETGPPPFLTKTFDMVDDPSTDHIVSWSRSGSSFFVWDPCSFSTNLLPRFFKHNNFSSFVRQLNTYGFRKIDSDRWEFSNGEFIRGHKHLLRNIRRRRAPSQVTSQVPGQCVEVGGFGVEEEILRLRRDKQVLMMELVKLRQQQQNTRAYLQEMEQRLQGTEMKQEQMMAFLARALKNPSFLHQLIQQNKTKELEEAMTRKRRRSIEQGRIDVAESNSESEGRNNPVKVEVSELEVLAMEMQGLGRGKREQEALESPEGLDRELDEGFWEEFFSENVVGELEIPSDEGEGEDEDVDINVLARRLGYIGSSSLKPLLLRQEPVAALAVIFNLKIISEAGEYWTRSI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1299 380 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Lele08g1299 380 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g1299 380 MobiDBLite consensus disorder prediction 230 252 - -
Lele08g1299 380 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g1299 380 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g1299 380 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g1299 380 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g1299 380 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 251 IPR027725 -
Lele08g1299 380 Coils Coil 158 192 - -
Lele08g1299 380 Gene3D - 35 133 IPR036388 -
Lele08g1299 380 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g1299 380 MobiDBLite consensus disorder prediction 230 261 - -
Lele08g1299 380 FunFam Heat shock transcription factor 1 36 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1299 Lele-ChrLele08 8296052 8297541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1299 23 346 HSF AT3G22830 48.387 6.94e-114 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele08g1299 HSF_DNA-bind 1.2e-31 CL0123