Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1298 ATGTTTCCTTCGGCGATGTCCAATTCTACTACTTCTTTGTCCGTAGAATCCTCTGTCTCTTCTGCTGCTAGACTTCATGACCTCTCTGGAGTAGTAAATCCCGTACTCCCCACAATTCCTCCTCAGCAGCCTCTAAAGATCAAGAAAAAGAGAAGCCTCCCCGGAAACCCAGACCCAGATGCCGAAGTGATAGCGTTATCCCCGAAGACTCTTTTGGCGACCAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAATCTTCAACTTCATAGGAGAGGCCATAACCTGCCATGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTGAAAAAGAGAGCCTACGTTTGCCCCGAGCCTTCATGCGTTCATCACAACCCCTCGAGGGCTCTGGGGGATCTCACGGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGCGAGAAATGCTCAAAGATCTACGCTGTTCAGTCAGATTGGAAAGCACACTCTAAAACCTGTGGAACTAGAGAATATAGATGTGATTGTGGAACTCTCTTCTCTAGGAAGGACAGCTTCATTACTCATAGAGCATTCTGTGATGCATTGGCAGAAGAAAGTGCAAGACTCTCAGCAAATCAAATAGCCTCCACCACCAACACGAACCCACTGGTTCAATCTCTCTTACTATATCCCAACCATCAACACAGCTTCCTCAATAATCCATGGAACCCATCTCCTGAAAACCCTAATCCCAGCAACGTCCTCCAAGTCAAGCCCGAAGCTCAACATTTCCAGATGCCTCATTCGTTTCTTCAGGAACCTCTTCATCATCCTCACCACAAGAGTAGTGCTCTGATAAACACACCCTTTCGGAACCCTCACATGATGTCCACGCAATCTTCCTCAAACGCTGCCCCGTCAGCCCATCTTTCTGCTACTGCTCTTCTTCAAAAGGCTGCCACCGTCGGGGCCACCCCAATCACGCCCCAACCGTCTCATTCTCAGACTCATCACCTGACTCATCATCAGCTTAGCATGAGCGAGTTTGGATCAGTGAATCAGCTCGACTCGGTGATGCCTGACTGTACGAGAGGGTTCGCGACTCGGAATCTTAAAAATGAGCATCTGACAAGGGACTTCCTGGGTCTCACCGACGATGGCAACAACGGAGGCGACGGTGAGAACGGCGGTGCGGTCAACCTGAAGAATGTCATGACGTTCCCGGGGGATGTGTACGAGCACCACCATCACCACTCGCTCTTCAATTCCCGACAAGGTTTCGGATTCGTTGGGACTTCCAATGCCCCCGATACGTGGAGCAATTATTAA 1335 0.4921 MFPSAMSNSTTSLSVESSVSSAARLHDLSGVVNPVLPTIPPQQPLKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQIASTTNTNPLVQSLLLYPNHQHSFLNNPWNPSPENPNPSNVLQVKPEAQHFQMPHSFLQEPLHHPHHKSSALINTPFRNPHMMSTQSSSNAAPSAHLSATALLQKAATVGATPITPQPSHSQTHHLTHHQLSMSEFGSVNQLDSVMPDCTRGFATRNLKNEHLTRDFLGLTDDGNNGGDGENGGAVNLKNVMTFPGDVYEHHHHHSLFNSRQGFGFVGTSNAPDTWSNY 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1298 444 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Lele08g1298 444 SMART c2h2final6 118 148 IPR013087 -
Lele08g1298 444 SMART c2h2final6 153 173 IPR013087 -
Lele08g1298 444 SMART c2h2final6 77 99 IPR013087 -
Lele08g1298 444 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 399 IPR031140 -
Lele08g1298 444 MobiDBLite consensus disorder prediction 34 58 - -
Lele08g1298 444 Gene3D Classic Zinc Finger 146 210 - -
Lele08g1298 444 FunFam protein indeterminate-domain 12-like 56 124 - -
Lele08g1298 444 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Lele08g1298 444 Gene3D Classic Zinc Finger 57 125 - -
Lele08g1298 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Lele08g1298 444 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1298 Lele-ChrLele08 8287927 8290993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1298 11 433 IDZ Gene Family AT4G02670 49.657 2.81e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g1298 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1440 05 9207193 9210527 Lele08g1298 08 8287927 8290993 hybridization
Lele06g1303 06 8344590 8347619 Lele08g1298 08 8287927 8290993 hybridization