Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1293 ATGGAAGCAAAAATTCTGACAGTGAGCAGAAATCCAGCAGTAACTGCCGCACACAGGAAGTTCAAACATAAACCAAGACATCCCTGTGTGGTTGGAGTGCTGACAAGACCTGCAGATGACATTAAAGAAGAAACAAGACAAACCAATGTCTATAAAGACAACTGGTTCGATCGCTTGGCTATAAATCATCTTTCTAAGAACGTTCAAGAGGCATCAGGACTCATTAACAGCAAGAGTGGATATGATAGCTTGGTTGAGGCGGCCACTGTGGTTTCTCAGAAATTCAATCCTTCTCAGCAACGTGAAATTGTCATTCAAGCTCTCGACAGAAGCTTCCCAAGGCCAATACTCTCCTTTATAAGGACAGTGCTGCCGCCTGGTAGATTGGCAAGGGAATATTTCGCCGCCTTTACTACTTTGTTTTTTGCTTGGTTAGTCGGGCACTGCGAGGTGAGGGAATCAGAGGTCAACGGGATAAGAGAAAGAAATGTTGTCCACATAAAAAAGTGCAGGTTTTTGGAACAGACAAATTGTGTTGGGATGTGCGTTAATCTCTGCAAAATGCCATCTCAATCATTTATAAAGGACACGTTGGGTATGCCAGTCGACATGGTTCCAAATTTTGATGACATGAGTTGTGAGATGATATTTGGCGAGGATCCTCCAGCATCAACAGATGATCCAGCACTTAAGCAACCATGCTATAAACTATGTTCGGTAAAGAAGAAGCATGAGATGAACTGCCTCAATTAA 753 0.429 MEAKILTVSRNPAVTAAHRKFKHKPRHPCVVGVLTRPADDIKEETRQTNVYKDNWFDRLAINHLSKNVQEASGLINSKSGYDSLVEAATVVSQKFNPSQQREIVIQALDRSFPRPILSFIRTVLPPGRLAREYFAAFTTLFFAWLVGHCEVRESEVNGIRERNVVHIKKCRFLEQTNCVGMCVNLCKMPSQSFIKDTLGMPVDMVPNFDDMSCEMIFGEDPPASTDDPALKQPCYKLCSVKKKHEMNCLN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1293 250 Pfam Beta-carotene isomerase D27-like, C-terminal 144 224 IPR025114 GO:0005506
Lele08g1293 250 PANTHER BETA-CAROTENE ISOMERASE D27 24 248 IPR038938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1293 Lele-ChrLele08 8227113 8230326 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1293 08 8227113 8230326 Lele13g1966 13 27151420 27152548 CCT
Lele08g1293 08 8227113 8230326 Lele14g1893 14 25459948 25461060 CCT
Lele08g1293 08 8227113 8230326 Lele15g0442 15 2567107 2568218 CCT
Lele08g1293 08 8227113 8230326 Lele16g0466 16 2542243 2543363 CCT
Lele13g2266 13 28776579 28779048 Lele08g1293 08 8227113 8230326 CCT
Lele14g2202 14 27120825 27123350 Lele08g1293 08 8227113 8230326 CCT
Lele15g0146 15 894153 896957 Lele08g1293 08 8227113 8230326 CCT
Lele16g0151 16 915661 918188 Lele08g1293 08 8227113 8230326 CCT
Lele05g1435 05 9127958 9131008 Lele08g1293 08 8227113 8230326 hybridization
Lele06g1296 06 8263028 8266228 Lele08g1293 08 8227113 8230326 hybridization