Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1292 ATGGCGGGAAAAGGGGGCAAGGGGCTTTTGGCTGCAAAAACTACGACTGCTAACAAGGACAAAGATAAGGATAAGAAAAGGCCTGTTTCCAGGTCATCCCGTGCCGGAATCCAGTTTCCTGTGGGTCGTATTCATAGACAACTGAAACAAAGGATCCAAGCAAATGGGCGTGTTGGGGCCACAGCTGCAGTTTACTTGGCCTCCATTCTTGAGTACCTGACAGCCGAAGTTCTGGAGCTTGCTGGAAACGCAAGCAAAGATCTGAAGGTGAAGAGGATCACACCAAGGCATCTGCAGCTTGCTATCAGAGGAGATGAAGAACTTGACACCCTCATTAAGGGAACTATAGCTGGTGGGGGTGTCATCCCTCATATTCACAAGTCACTCATCAACAAGACCTCCAAAGAATGA 411 0.4866 MAGKGGKGLLAAKTTTANKDKDKDKKRPVSRSSRAGIQFPVGRIHRQLKQRIQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1292 136 MobiDBLite consensus disorder prediction 16 31 - -
Lele08g1292 136 Pfam C-terminus of histone H2A 106 135 IPR032454 -
Lele08g1292 136 SMART h2a4 16 136 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1292 136 FunFam Histone H2A 15 136 - -
Lele08g1292 136 PRINTS Histone H2A signature 113 131 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1292 136 PRINTS Histone H2A signature 57 72 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1292 136 PRINTS Histone H2A signature 86 100 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1292 136 PRINTS Histone H2A signature 72 85 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1292 136 PRINTS Histone H2A signature 27 49 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1292 136 PANTHER HISTONE H2A 21 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1292 136 CDD H2A 27 132 IPR002119 GO:0000786|GO:0003677|GO:0030527
Lele08g1292 136 Pfam Core histone H2A/H2B/H3/H4 16 104 IPR007125 GO:0003677
Lele08g1292 136 MobiDBLite consensus disorder prediction 1 36 - -
Lele08g1292 136 Gene3D Histone, subunit A 15 136 IPR009072 GO:0046982
Lele08g1292 136 SUPERFAMILY Histone-fold 13 113 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1292 Lele-ChrLele08 8224840 8225748 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1434 05 9125000 9126104 Lele08g1292 08 8224840 8225748 hybridization
Lele06g1295 06 8259444 8261130 Lele08g1292 08 8224840 8225748 hybridization