Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1286 ATGGCAAATAATCCTTCCGACGCCCCCGCGGACGACTTCCTCGAACAAATCCTTGGACTCCCAACCTTCGCTTCTGCCGACTCCGGCTTAGCCGGTACGGCTGCTCCGCCTCCGATGATGCTGCAGCTCAACTCCGGCGACGGCACCGACCACCTCACTTCTGTTGGCGCTGGTGGCGGCGGTAGTGGTGCCTTTCATGCACCGGTGTATCAGCTAGGCCTGAGCTTGGAACAAGGGAAAGGAGGTTTTCTGAAGCCCGAGGAGGCTTCTGGAAGTGGGAAGCGATTTCGCGAAGACATCGTTGATAATAGAGCGAAGAATGTTTTTCATGGTCAACCCTTGCCTACTACCATTCCCGTAGCTCCACATCCACCAGCAATGCGTCCTAGAGTCCGAGCTAGAAGAGGACAAGCTACAGATCCACACAGTATAGCGGAACGGTTGCGCAGAGAAAGAATAGCAGAAAGAATCAGGGCTTTGCAGGAACTTGTTCCTAGTGTCAATAAGACAGATAGAGCTGCCATGCTAGATGAAATTGTGGATTACGTCAAATTCTTGAGGCTTCAAGTTAAGGTCTTGAGCATGAGTAGATTGGGCGGAGCTGGTGCAGTGGCACCACTGGTAACTGACATTCCATTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGAAGAAATCAACCAGCTTGGGAGAAATGGTCAAACGATGGCACAGAAACACATGTGGCTAAACTCATGGAAGAAAATGTTGGGGCTGCCATGCAATTCCTTCAATCAAAGGCTCTTTGCATCATGCCCATCTCACTGGCATCAGCAATATACCAGTCACAGCCACCGGACACCTCCAGTATAGTGAAGCCAGAAACTAACCCTCCTTCATAG 882 0.5079 MANNPSDAPADDFLEQILGLPTFASADSGLAGTAAPPPMMLQLNSGDGTDHLTSVGAGGGGSGAFHAPVYQLGLSLEQGKGGFLKPEEASGSGKRFREDIVDNRAKNVFHGQPLPTTIPVAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTETHVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1286 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 196 IPR036638 GO:0046983
Lele08g1286 293 SMART finulus 143 192 IPR011598 GO:0046983
Lele08g1286 293 Pfam Helix-loop-helix DNA-binding domain 142 186 IPR011598 GO:0046983
Lele08g1286 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 88 272 - -
Lele08g1286 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Lele08g1286 293 Gene3D - 132 194 IPR036638 GO:0046983
Lele08g1286 293 FunFam Basic helix-loop-helix transcription factor 132 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1286 Lele-ChrLele08 8175665 8179472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1286 65 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.426 1.20e-119 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele08g1286 HLH 1.1e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1427 05 9066363 9069538 Lele08g1286 08 8175665 8179472 hybridization
Lele06g1290 06 8217617 8221267 Lele08g1286 08 8175665 8179472 hybridization