Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1284 ATGGGGTTCAACTTTGACGGCGAGCTCATGAATCTGAAGGACACAGAGCTAAGGTTGGGATTGCCCGGAAGGGACGAGGAAGAAGATAAACGTTCATGCAGCGTCAGGAGCAACAAGAGGAGTTGGCGAGAATCAAGTGAGGACGAGGAATCCTCAGTAACCCAGAACAACGCCTGTAATAACAGTTCTGATGATCAAGATAACTCCCCACCAGCAAAGGTACAAGTAGTGGGATGGCCACCGATTCGATCTTACAGGAAGAATTGTGTTCAACAACAAAAGAAGGGATCTCAAGAGGGTAGTGATGGGGCTGGAAATATGTATGTGAAAGTGAGCATGGATGGTGCTCCTTATCTGAGGAAGATAGATCTCAAGGTTTACAACAGCTACACACAGCTCCTCAAGGCGTTGCAGAACATGTTCAAGTGCACTTTTGGGGAGTACTCAGAAAGGGAAGGCTACAACGGATCTGAGTACGCACCTACTTATGAAGACAAGGATGGCGACTGGATGCTGGTTGGAGATGTTCCGTGGAATATGTTCACGTTATCTTGCAAGAGGCTGAGAATCATGAAAGGATCAGAGGCTAAGGGATTGGGTGGTAGTTTATGA 612 0.4706 MGFNFDGELMNLKDTELRLGLPGRDEEEDKRSCSVRSNKRSWRESSEDEESSVTQNNACNNSSDDQDNSPPAKVQVVGWPPIRSYRKNCVQQQKKGSQEGSDGAGNMYVKVSMDGAPYLRKIDLKVYNSYTQLLKALQNMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFTLSCKRLRIMKGSEAKGLGGSL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1284 203 FunFam Auxin-responsive protein 101 203 - -
Lele08g1284 203 Gene3D - 101 202 - -
Lele08g1284 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 197 IPR003311 GO:0005634|GO:0006355
Lele08g1284 203 Pfam AUX/IAA family 15 200 IPR033389 -
Lele08g1284 203 MobiDBLite consensus disorder prediction 1 75 - -
Lele08g1284 203 SUPERFAMILY CAD & PB1 domains 99 192 - -
Lele08g1284 203 MobiDBLite consensus disorder prediction 18 50 - -
Lele08g1284 203 ProSiteProfiles PB1 domain profile. 106 193 IPR000270 GO:0005515
Lele08g1284 203 MobiDBLite consensus disorder prediction 51 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1284 Lele-ChrLele08 8166182 8167025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1284 109 199 B3 DNA Binding Superfamily AT2G46530 38.462 1.22e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele08g1284 AUX_IAA 4.8e-62 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1969 13 27165077 27167494 Lele08g1284 08 8166182 8167025 CCT
Lele15g0440 15 2551279 2553657 Lele08g1284 08 8166182 8167025 CCT
Lele16g0464 16 2526832 2529326 Lele08g1284 08 8166182 8167025 CCT
Lele05g1425 05 9057310 9058148 Lele08g1284 08 8166182 8167025 hybridization
Lele06g1288 06 8208079 8208925 Lele08g1284 08 8166182 8167025 hybridization