Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1282 ATGGGTTTCGAGGAAACAGAACTCAGGCTGGGATTGCCCGGAAATAATGGCGGCGGCACCGAACCTGAAGTCGTCAGAAAGAGAGGATTCTCTGAGACTGAATCTGAGACTGTGGACTTGATGTTGAATCTCTCATCTTCAAAGGAAGCTGCAGATCCATCTGATAACCTCAAGAAGGAGAAGACCCTTCTGCCCTCTGATCTTGCCAAGTCTCGCGCTAAGGCGCAAGTGGTGGGGTGGCCACCAGTGAGATCGTTCAGGAAGAACATATTAAAGAGCAGTACTGGAGAAGAGAAGATGAAAGGAAGCCCTAATAATGGAAGCTTCGTGAAAGTAAGCATGGATGGAGCTCCTTACCTTCGCAAAGTGGACCTCAAGTTGTACAAAACTTACCAAGATCTCTATGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATTGGAAACTGTGGATCCCAAGGAATTAAGGACTTCATGAACGAGAGTAAGCTGATGAATCTCTTGAACAGCTCTGACTATGTCCCAACCTATGAAGACAAAGACGGCGACTGGATGCTTGTCGGCGACGTCCCTTGGGAGATGTTTGTCGAAGCATGCAAGCGTTTGCGCATCATGAAAGGCAAGGAGGCTATCGGACTTGCTCCGAGAACCATGGAGAAATGCAAGAACAGAAGCTAG 678 0.4808 MGFEETELRLGLPGNNGGGTEPEVVRKRGFSETESETVDLMLNLSSSKEAADPSDNLKKEKTLLPSDLAKSRAKAQVVGWPPVRSFRKNILKSSTGEEKMKGSPNNGSFVKVSMDGAPYLRKVDLKLYKTYQDLYDALAKMFSSFTIGNCGSQGIKDFMNESKLMNLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVEACKRLRIMKGKEAIGLAPRTMEKCKNRS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1282 225 Gene3D - 102 219 - -
Lele08g1282 225 SUPERFAMILY CAD & PB1 domains 101 206 - -
Lele08g1282 225 FunFam Auxin-responsive protein 102 217 - -
Lele08g1282 225 Pfam AUX/IAA family 5 216 IPR033389 -
Lele08g1282 225 ProSiteProfiles PB1 domain profile. 107 207 IPR000270 GO:0005515
Lele08g1282 225 MobiDBLite consensus disorder prediction 1 32 - -
Lele08g1282 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 212 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1282 Lele-ChrLele08 8156090 8157673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1282 94 215 B3 DNA Binding Superfamily AT4G23980 31.967 5.17e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele08g1282 AUX_IAA 3.9e-79 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1424 05 9046802 9048346 Lele08g1282 08 8156090 8157673 hybridization
Lele06g1286 06 8198943 8200512 Lele08g1282 08 8156090 8157673 hybridization