Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1271 ATGGCCGTCGACGCGCTTCAACTCCGTCGCCATTCTCCCACCAATCCTCCCCCTCTCCAGCCCAAGCCCCCCCGTTTCGGCCTTCCCTCCTCTAAGGAGGCGCATTTCAGGGGTGTACGTAAGCGTCCCTGGGGCCGATTCGCCGCCGAGATCCGCGATCCCTGGAAGAAGACGCGCAAATGGCTCGGAACCTTTGATACCGCTGAGGAGGCGGCTCGGGCCTATGACGAGGCTGCCAGGAGTCTTCGTGGACCCAGGGCGAAGACCAACTTCGTCTATACCGCTGTTCCCGTCGCTCCGTCGGCCCCGATGCCACCGGTGGCGGCCTCTACTGCTGCTGACGGTGGAGAGATGTATGGGAGGCGCGTGGACTTTTGGAGGGCCCCGGTGTATTATGCGGCGGATGCCACCGCAGGAGTGTCGGTGAGATCGGAGTACAAGGGATACAAGTTGGAGAATGTGGATGCGGCGGTGGGCGAGGAGAGAAAGGTACGAAAAGAGAAGAAACCGCTCATGCTCGATCTTAATCAAATACCGCCCCTCTTCTGA 549 0.6084 MAVDALQLRRHSPTNPPPLQPKPPRFGLPSSKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDEAARSLRGPRAKTNFVYTAVPVAPSAPMPPVAASTAADGGEMYGRRVDFWRAPVYYAADATAGVSVRSEYKGYKLENVDAAVGEERKVRKEKKPLMLDLNQIPPLF 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1271 182 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Lele08g1271 182 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Lele08g1271 182 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Lele08g1271 182 CDD AP2 34 91 IPR001471 GO:0003700|GO:0006355
Lele08g1271 182 SUPERFAMILY DNA-binding domain 35 92 IPR016177 GO:0003677
Lele08g1271 182 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Lele08g1271 182 Gene3D AP2/ERF domain 34 93 IPR036955 GO:0003700|GO:0006355
Lele08g1271 182 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 29 113 - -
Lele08g1271 182 MobiDBLite consensus disorder prediction 1 34 - -
Lele08g1271 182 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Lele08g1271 182 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1271 Lele-ChrLele08 8086417 8086965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1271 32 181 AP2-EREBP Transcription Factor Family AT5G44210 41.989 2.33e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele08g1271 AP2 4e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1417 05 8983217 8986615 Lele08g1271 08 8086417 8086965 hybridization