Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1259 ATGGAGTTCAGGTACCCAGAAGAGTCAAAGAGCTGGAGCGAAGAAAGTGATGATCGATCGGAGCATAATGATGAAAGGGGAAGTGGAAGATCCTACGAGTGTGTGTTTTGCAAGAGAGGATTCACCACAGCACAAGCTTTAGGTGGACACATGAATATTCACAGGAAAGATAGAGCCAAGTCCAGCAAACCCAGTTTAATTCCTGCTTCCACTTCAACCAAACTGCTTGACGACCATGAGATCGACCAGGCAAGTTTTCCACCACCTGGGAGTTACTTAGATCACAGCAACAGTAATTATAATTATGATTACCCTCCCTCCCAAATTTCTTTTCCTGCAGTACATCAGTACAGTGATAAAAGGGATCGGGACTTGTTCGGAGGCGATTATAATTGGAGGACGGATTTGGCTTTGTCTAGTCCACTGTGTGTGCCTGATAATAAAAACAAGATTGGAGATAGCAGTGAAGAAGATGGTCTCGATTTGGAGCTTCGATTGGGTTATCATTCCTAA 513 0.4386 MEFRYPEESKSWSEESDDRSEHNDERGSGRSYECVFCKRGFTTAQALGGHMNIHRKDRAKSSKPSLIPASTSTKLLDDHEIDQASFPPPGSYLDHSNSNYNYDYPPSQISFPAVHQYSDKRDRDLFGGDYNWRTDLALSSPLCVPDNKNKIGDSSEEDGLDLELRLGYHS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1259 170 MobiDBLite consensus disorder prediction 1 29 - -
Lele08g1259 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Lele08g1259 170 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Lele08g1259 170 Gene3D Classic Zinc Finger 8 85 - -
Lele08g1259 170 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Lele08g1259 170 PANTHER OS07G0101800 PROTEIN 7 169 - -
Lele08g1259 170 Pfam C2H2-type zinc finger 32 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1259 Lele-ChrLele08 8013992 8014504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1259 32 64 C2H2 Transcription Factor Family AT5G43540 75.758 1.01e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g1259 zf-C2H2_6 1.4e-05 CL0361