Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1256 ATGCATGTACCTGCCGATAGCCATAGAAAGGGGACTGGCAGAACTTATAGTACTGTGATAGAAATGGAGAAATTAAAGAGAATGGTGAAGAAAAGCAACGATTTGGTGGGTAAAGATCGAACCTTTGCCAGCAGGAATGCTCTTGTGAGCTCCCATATCTGTGTTTCTGGACTGAAGCCTGAAATCGACGCTATTATCGTCATGGCTTCCATGGATAGCGGCGCCTTTGTTTCGTCGCCGGACATGGAAAAGTTCCTCTGTGAATTATTACTGGATTCCACGCAACCGATTTCTGAGCGCTTCAGGGCTCTCTTCTCTCTCCGCAATCTCAAAGGTCCCTCCCCTCGCAACGCCCTTATTCTCGCCACAAGGGATTCTTCAAATTTGTTGGCACACGAGGCTGCATTTGCACTGGGTCAAATGCAGGATGTGGAAGCCATCCCTGCTTTGGCTTCAGTTTTAAATGATCTTTCTTTGCATCCCATTGTTCGCCATGAGGCCGCAGAAGCTCTTGGTGCTATTGGTTCAGATGGCAATGTTCCTCTACTGAAGAATAGTTTGGGTTTAGATCCTGCTCAGGAGGTTCGGGAAACATGTGAATTGGCTCTTCAACGTATTGAGCATTTGAAAGATGCTGGCAGCAGTGATGAATTGTCTGTAACTGATGCATCACCTTTTAAGTCTGTTGATCCTGCAGCACCAGCTGCTTCATGTTCTTCTGTGGATCAATTAAGGAAAGTACTTCTGGATGAAGAAAAAGGAATGTATGAACGGTATGCAGCTCTTTTTGCCCTTCGAAATGATGGTGGAAATGAAGCTGTTGCTGCTATAATTGATTCCGTGGGTTCAAAAAGTGCTCTCCTTCGCCATGAGGTTGCTTATGTTTTGGGCCAATTACAAGACAAAGCTGCTTCGGCTGCACTATCCAATATACTTAAGGATGGGAATGAGCATCCAATGGTCAGACATGAAGCTGCTGAAGCTCTTGGTTCAATTGCAGATGACCGAAGTGTAGCACTTCTTGAGGAATTTGTGGCAGATCCGGAGCCTCTTGTCTCACAAAGCTGTCAAGTTGCTCTGAGTATGCTAGAATTTGAACAGTCAGGGAAATCGTTTGAGTTCTTCTTCATGCGCACGCCACTTGTTGAATAA 1152 0.4549 MHVPADSHRKGTGRTYSTVIEMEKLKRMVKKSNDLVGKDRTFASRNALVSSHICVSGLKPEIDAIIVMASMDSGAFVSSPDMEKFLCELLLDSTQPISERFRALFSLRNLKGPSPRNALILATRDSSNLLAHEAAFALGQMQDVEAIPALASVLNDLSLHPIVRHEAAEALGAIGSDGNVPLLKNSLGLDPAQEVRETCELALQRIEHLKDAGSSDELSVTDASPFKSVDPAAPAASCSSVDQLRKVLLDEEKGMYERYAALFALRNDGGNEAVAAIIDSVGSKSALLRHEVAYVLGQLQDKAASAALSNILKDGNEHPMVRHEAAEALGSIADDRSVALLEEFVADPEPLVSQSCQVALSMLEFEQSGKSFEFFFMRTPLVE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1256 383 SUPERFAMILY ARM repeat 64 206 IPR016024 -
Lele08g1256 383 FunFam Deoxyhypusine hydroxylase 75 224 - -
Lele08g1256 383 Pfam PBS lyase HEAT-like repeat 288 314 IPR004155 -
Lele08g1256 383 Pfam PBS lyase HEAT-like repeat 321 347 IPR004155 -
Lele08g1256 383 Gene3D - 63 223 IPR011989 -
Lele08g1256 383 Gene3D - 227 371 IPR011989 -
Lele08g1256 383 PANTHER PBS LYASE HEAT-LIKE PROTEIN 84 368 - -
Lele08g1256 383 SUPERFAMILY ARM repeat 161 361 IPR016024 -
Lele08g1256 383 Coils Coil 192 212 - -
Lele08g1256 383 Hamap Deoxyhypusine hydroxylase [DOHH]. 83 373 IPR027517 GO:0008612|GO:0019135
Lele08g1256 383 SMART E-Z type HEAT repeats 255 284 IPR004155 -
Lele08g1256 383 SMART E-Z type HEAT repeats 128 157 IPR004155 -
Lele08g1256 383 SMART E-Z type HEAT repeats 319 348 IPR004155 -
Lele08g1256 383 SMART E-Z type HEAT repeats 161 190 IPR004155 -
Lele08g1256 383 SMART E-Z type HEAT repeats 97 126 IPR004155 -
Lele08g1256 383 SMART E-Z type HEAT repeats 286 315 IPR004155 -
Lele08g1256 383 FunFam Deoxyhypusine hydroxylase 232 373 - -
Lele08g1256 383 Pfam HEAT repeats 119 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1256 Lele-ChrLele08 8000560 8004974 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1404 05 8882404 8885392 Lele08g1256 08 8000560 8004974 hybridization
Lele06g1264 06 8060734 8064464 Lele08g1256 08 8000560 8004974 hybridization