Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1249 ATGAGCTCCTCAAAGGCCAAGTCTGCGCCCTTTAAGTCTAAGAAGCCCCATATCTGTGATTCAGCCTCCAAATCCCAATCACCAGATCCCATTTCATTGAGCTCCAAAACTCCAGAGAAGGCCTCACAGCTCTCACACCGCACCAGAAACCGGGGCGTTGCGCTCTCCCTTAAGGAAGTCAGGAAAGTCGCTGAAAGCCTCCAGGAACAGAAAGGCCAGCGGCAATATAATGATCGTTCGGAGCAGATCAAGTCCGCCCGAAGGAAGATTGCACCGTCTTTCGCCGAAATGCCCCCCTGCAAATCCAAGGCATATGTGGATAAGACCGTCAAGCTGCCGGAAAAGTATGAAATTTTGGGCGAGTTCTTTGACAGCTTGGATAGCTCGATCCGATTGTTGCATTTGAAAGGTTCCTCAACAACTTTCACGAATATCTGCCCTAAAATTGAATGTTTAACTGATAGGAGATTTACGCACAGTCACCTGGCCCAGTTGAAATATATATTTCCTGAGGCACTCGTTATAAAGAAGGTGCTCAGGTTGGATGACCGAACAAGCTGTATGAAGCCAGACCTCCATCTTACATTGAATCCCGATTCGAAGTTGCTTTCTGAAGGTGGACGTGTGCCCTTGCGAAAGTTATTTCGCACACGGTTAAGAGATTTTTATGAATCACATCCTGAGGTTGATGAAATTCCGGAAGAAATACTGCCTGAGCCATTCAATCACCGTAAGCAAGATTGTTCTTTAGAAACATTGAGAACTACCTCATCATCTGCTACAATACCATCAAATGATGCAGTTGCACCTCGTCATGGAGCTGCAGAACCTTTATCCATGCTAGATGATGCCATGATAATCAATTCAGAGCCTGCTAAGGGAGAAGAAAACTTGTCAGTGCCTGTTAACACTTCAATCGGAGCACATTTTCAACAACCAGCTGTAGCCACTCATATGTCTCAATCTTTTAGAAGGCGATTTTCTCAGAAATCCGTAAACGATGAAGCAGATGATGTGCAACAAAAGTCATCATCAGGTTCATTACCCCCTCAATCTGTCCCAGTTTCAGAATCAAGCGTGAAGAAAAATTCATCAAGTGTAGACACTACTTTGTGCCCAACAATACTTGCTTCTCCAGCTAATCTCAAATCATCTGGTTCTTCAGTTGCCACTCCAAATAAAGTTGCTTCTACTCCATCTAGGTTGATGACTCATACACCTTCACTGCCAACCCCTAAGAGATGTTACATGAGCCCGGATGACAGCTCTTGTAGCTCACCAAACAAGTTGGTTAGGCGTTCAACTAGTTTGAAGAAGTCATTGAACTTTGACACTCCAGTGAAAAATCGGGGGACAGAGAATGAAGCTGATGATGCTGTTGGCTTATCAAGTGATGATGATATTTTTGATATTCTCCCTGAGAATCTTCTCCAGTCGATTAAAGAAAAGGAGAGAGTGGCAATGGAGGAAAGAGATCCAGCAATCTCACAAGCAAAAAGACGGCAAAAAATGATCGCCTGCCTCCCTAAGCTATTTAACATGATTCATCTCTTGATTCATTCAATGAATCGTTCTGTTGTCACAAAAGAGGAGCTTCTAAGCAAGATAATCTCAAACCATTGTGATATTGTTGACCGGAGAGAAGTTGAAGAGCAGCTGAATTTGTTGTTAGAACTAGTTCCAGAATGGATTTCTGAAAAGTTGGCATCTAGTGGAGATCTGCTATTCTGCATAAATAAAATGCACAACCCCGAGACCATACGATCACAACTTGCGGAAGCAAAGTGA 1788 0.4357 MSSSKAKSAPFKSKKPHICDSASKSQSPDPISLSSKTPEKASQLSHRTRNRGVALSLKEVRKVAESLQEQKGQRQYNDRSEQIKSARRKIAPSFAEMPPCKSKAYVDKTVKLPEKYEILGEFFDSLDSSIRLLHLKGSSTTFTNICPKIECLTDRRFTHSHLAQLKYIFPEALVIKKVLRLDDRTSCMKPDLHLTLNPDSKLLSEGGRVPLRKLFRTRLRDFYESHPEVDEIPEEILPEPFNHRKQDCSLETLRTTSSSATIPSNDAVAPRHGAAEPLSMLDDAMIINSEPAKGEENLSVPVNTSIGAHFQQPAVATHMSQSFRRRFSQKSVNDEADDVQQKSSSGSLPPQSVPVSESSVKKNSSSVDTTLCPTILASPANLKSSGSSVATPNKVASTPSRLMTHTPSLPTPKRCYMSPDDSSCSSPNKLVRRSTSLKKSLNFDTPVKNRGTENEADDAVGLSSDDDIFDILPENLLQSIKEKERVAMEERDPAISQAKRRQKMIACLPKLFNMIHLLIHSMNRSVVTKEELLSKIISNHCDIVDRREVEEQLNLLLELVPEWISEKLASSGDLLFCINKMHNPETIRSQLAEAK 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1249 595 Pfam DNA replication factor Cdt1 C-terminal domain 475 567 IPR032054 -
Lele08g1249 595 SMART CDT1_2 112 239 IPR014939 -
Lele08g1249 595 MobiDBLite consensus disorder prediction 381 431 - -
Lele08g1249 595 MobiDBLite consensus disorder prediction 20 41 - -
Lele08g1249 595 PANTHER DNA REPLICATION FACTOR CDT1 10 595 IPR045173 GO:0003677|GO:0030174|GO:0071163
Lele08g1249 595 Pfam DNA replication factor CDT1 like 112 198 IPR014939 -
Lele08g1249 595 FunFam CDT1-like protein a chloroplastic 465 595 - -
Lele08g1249 595 MobiDBLite consensus disorder prediction 316 367 - -
Lele08g1249 595 CDD Cdt1_m 106 242 IPR014939 -
Lele08g1249 595 CDD Cdt1_c 471 592 IPR032054 -
Lele08g1249 595 MobiDBLite consensus disorder prediction 1 53 - -
Lele08g1249 595 MobiDBLite consensus disorder prediction 381 407 - -
Lele08g1249 595 Gene3D - 464 595 IPR038090 -
Lele08g1249 595 MobiDBLite consensus disorder prediction 338 367 - -
Lele08g1249 595 SUPERFAMILY "Winged helix" DNA-binding domain 108 241 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1249 Lele-ChrLele08 7938405 7941291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1249 6 593 Core DNA Replication Machinery Family AT2G31270 43.535 1.04e-121 370