Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1238 ATGGATTCAGATCCCTTTTTATGGCAATACCCACAACCTGATTCCTCCCCTCTAGATTCCTTTGTTTCTGATGGAGTATTGTCCTCTTGGGACCAGGACCTCTGGCTCTTCAACGACTACTGCTTCTCACAAGATCATGCCATGTCTTGCGATGTTATGGCCAAGGATTCGTCGTCATCCGACTCCAATTCTTCAACGTTAGAGGTGGCAGTGCAACAAGAAGTCTCCTCCGGTTTCACCTGCGCCAAAGTTGAGGTGAGAGAAGAAGCGTCCCCTCCGCCGGCGGCGGCAGTGGATCAGAAGAGGGTGTACAGAGGAGTGAGGAGGCGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGACTCCACCAGAAAAGGGGTCAGAGTGTGGATCGGAACATTTGACACAGCAGAAGAAGCGGCTCTGGCTTATGATCAGGCCGCATTGTCGACGAGGGGGTCACAGGCGGTACTGAATTTCCCGGAGGAAGTGGTGAGAGAGTCGCTGAGGAAGATGCCGTACAAGACATGGCAGGAAGCTTGCTCTCCTGTGTTAGCTCTCAAGAAGAAACACACTACCAAACGGAAGTCCAAGAAATCCAGAACTCCTCCTCCGCCGGTCAAAACCCAGATCGATTCTCCTCATAAGGGTGTGTTGGTGCTGGAGGATTTGGGAGCCGAATATCTTGAACAGCTTTTGGCCCTCACTACTCAATATTGA 720 0.5236 MDSDPFLWQYPQPDSSPLDSFVSDGVLSSWDQDLWLFNDYCFSQDHAMSCDVMAKDSSSSDSNSSTLEVAVQQEVSSGFTCAKVEVREEASPPPAAAVDQKRVYRGVRRRPWGKYAAEIRDSTRKGVRVWIGTFDTAEEAALAYDQAALSTRGSQAVLNFPEEVVRESLRKMPYKTWQEACSPVLALKKKHTTKRKSKKSRTPPPPVKTQIDSPHKGVLVLEDLGAEYLEQLLALTTQY 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1238 239 CDD AP2 104 162 IPR001471 GO:0003700|GO:0006355
Lele08g1238 239 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Lele08g1238 239 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Lele08g1238 239 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Lele08g1238 239 Gene3D AP2/ERF domain 103 163 IPR036955 GO:0003700|GO:0006355
Lele08g1238 239 MobiDBLite consensus disorder prediction 188 214 - -
Lele08g1238 239 SUPERFAMILY DNA-binding domain 103 162 IPR016177 GO:0003677
Lele08g1238 239 PANTHER DNA-BINDING DOMAIN 64 233 IPR044808 GO:0003700|GO:0009873
Lele08g1238 239 MobiDBLite consensus disorder prediction 188 202 - -
Lele08g1238 239 Pfam AP2 domain 103 153 IPR001471 GO:0003700|GO:0006355
Lele08g1238 239 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Lele08g1238 239 FunFam Ethylene-responsive transcription factor 2 102 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1238 Lele-ChrLele08 7847916 7848635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1238 101 234 AP2-EREBP Transcription Factor Family AT3G23240 56.115 3.11e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele08g1238 AP2 6.7e-15 CL0081