Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1235 ATGAGAAACATGTGCCATCGTGCTACGGAGCTACAGTGAGAGGAGAAAATGGGAAGAGCTCCTTGCTGCCAGAAAGTGGGTTTGAAGAGAGGTCCTTGGACTGCAGAAGAAGATCAGATTCTGATCAATCATGTCAACAAATATGGCCACAGCAATTGGCGTGCTCTCCCCAAATTAGCTGGGCTTCTGAGGTGTGGAAAAAGTTGCAGACTCCGATGGATCAATTATTTGAAGCCAGACATCAAACGAGGAAACTTCACCCAAGAAGAAGAGGATACCATAATCAAGCTTCGTGAAATGTTGGGAAACAGATGGTCGGCAATAGCAGCGAAGCTACCGGGCCGCACAGACAATGAAATAAAGAATGTGTGGCACACACACTTGAAGAAGAGGCTTCCACAGAACCAACAGAACCATCCCCAAACAAAACGAAAACCAAAACAAAAGGAACAACACGCCGTCACCGACAACAGTCCACTCTCTCCTTCGCATTCAAGTGACTCGTCCACCGTCACCACCACCACCACAAACAACGATAACAGTATTACCACTAGTAGTCCTGCGACTAACGTTACTAACGACGACGACATGTCCATAAATATTAATGTTGAGCAGTCCCTGGCGTTGGACGATGATTTCTGGTCGGAAGTCCTGTCGGCTGATAAATCCGAGGAGACTACCGATTACGTTCCGGCAGCGGCAGGCGGTGGGGTGGAGTCAGAGTTTCAGTTCCTGTTGTCTCAACTAGACGATGCACAAGTAGAAGGAGATCATGTGAGTTCATTAAGCATGGGCTATGGCATGGATTTTTGGTTTGATGTTTACAATAGAGCCGACCAATTTCCGGAGCTACCACAGTTATGA 864 0.4722 MRNMCHRATELQXEEKMGRAPCCQKVGLKRGPWTAEEDQILINHVNKYGHSNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFTQEEEDTIIKLREMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLPQNQQNHPQTKRKPKQKEQHAVTDNSPLSPSHSSDSSTVTTTTTNNDNSITTSSPATNVTNDDDMSININVEQSLALDDDFWSEVLSADKSEETTDYVPAAAGGGVESEFQFLLSQLDDAQVEGDHVSSLSMGYGMDFWFDVYNRADQFPELPQL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1235 287 SMART sant 82 130 IPR001005 -
Lele08g1235 287 SMART sant 29 79 IPR001005 -
Lele08g1235 287 MobiDBLite consensus disorder prediction 120 197 - -
Lele08g1235 287 MobiDBLite consensus disorder prediction 153 197 - -
Lele08g1235 287 FunFam Transcription factor MYB15 84 157 - -
Lele08g1235 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 77 IPR017930 -
Lele08g1235 287 FunFam MYB-related transcription factor 29 82 - -
Lele08g1235 287 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Lele08g1235 287 Gene3D - 85 158 - -
Lele08g1235 287 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Lele08g1235 287 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Lele08g1235 287 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 17 227 - -
Lele08g1235 287 CDD SANT 32 77 IPR001005 -
Lele08g1235 287 CDD SANT 85 128 IPR001005 -
Lele08g1235 287 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Lele08g1235 287 SUPERFAMILY Homeodomain-like 27 124 IPR009057 -
Lele08g1235 287 Gene3D - 27 83 - -
Lele08g1235 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1235 Lele-ChrLele08 7828809 7831080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1235 17 287 MYB Transcription Factor Family AT2G31180 49.819 6.44e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele08g1235 Myb_DNA-binding 3.6e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1380 05 8691434 8692830 Lele08g1235 08 7828809 7831080 hybridization
Lele06g1243 06 7882812 7885472 Lele08g1235 08 7828809 7831080 hybridization