Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1228 ATGAAACCTATGCCATTTCAGAAGAACTATAATCATATGATTGGCGTGTTAAAGCGTTTGAAACCAGTCCTTGATGACGTTATAGATTGCAAATCTTACTTGGATGAAAATTTATGTAAAGAGTGTGAAGATTTGGATATGGCAGTTAATGAAGCTCGAGAGTTCTTGGAAAATTGGAGCCCGAAGGGAAGCAGGATTCTAAGTGTTCTGCGAAGTGGGTCATTGTTGATGAAAATACAGATATCCTCAGTTGAAATTTGTCACTTGATATTTAGATCCCTACAGTCGCCTCCACCTACCTCAGTTTTGGCTAGTCTTGAGAGACTTGCTCATACAAACCTCATTCCTAATTATACTGTCAAGGCTATGGTAGCAAATTGGTGTGAGGAAAATAATGCCAAACTTCCCAGTTACTCTGAGTCCAATAATATGAAAACCCCCTTGGATCATCTATTGCCCCAAGATTTAGCTCGTTCATGTAGTTTTGGGTCTGTGCATAGTAGCAATTCCACATCAAGATCATCTCTTCAAGCTGGAAATGCACTTGAGAAGCAAAAAGGTGATATCTCTTCCAGATTAAGTGGAGAATCCAATGGATGCCAGAGCGTAGAAATAGAAAAATTTGAGCAACAATTTCCTGCTCCTGCCTATATTTATAGTAGAAGTGAATCATTCTCAGGCTCCATTTCTAGTACTGACTGTGCACATCCCGTTTCAAAAGAAGCATCAGAGATATTTGATAAGCAAGAAAATGTAAAGGAGCTGTCTGGAGAAATCACCAAGGGACCTGCTGCTCCTGCAAATAATGAATCAGGGTCTTCTCCTTGGTTATCAGGAAAGCAATTTCAAGGCCCAAGATCAAGATTAAGAGAAACAGAGCAAGGAAATAATAATAACGGCCAGTCAAAAGTGCATTCTCTTACTGTTTGCAATTCAGGATATGATGAGGTGACAACTACATCTTATGTCAATAAGTTGATTGAAGATCTTCAGAGTCAATCTGATGAAGTGCAAACTAAGGCTGCAGAAGAATTGAGGCTTCTTTCAAAGCACAATGTGGAAAACCGAATCATAATAGGGAGGTGTGGGGCTATCACACCTTTACTTTTACTACTTGATTCAGAAGTGAAGATAACACAAGAGCATGCTGTGACAGCTTTGCTGAATTTGTCCATTAGTGAAGATAACAAGGCCTTGATTGCGGAAGCTGGAGCAATTGAACCACTTATCCATGCACAACAACTTCTAAGCCATTTTCGTTATCAACGGGAAGGAGCTAATGGGAAGGGAAAAGCTTGA 1299 0.398 MKPMPFQKNYNHMIGVLKRLKPVLDDVIDCKSYLDENLCKECEDLDMAVNEAREFLENWSPKGSRILSVLRSGSLLMKIQISSVEICHLIFRSLQSPPPTSVLASLERLAHTNLIPNYTVKAMVANWCEENNAKLPSYSESNNMKTPLDHLLPQDLARSCSFGSVHSSNSTSRSSLQAGNALEKQKGDISSRLSGESNGCQSVEIEKFEQQFPAPAYIYSRSESFSGSISSTDCAHPVSKEASEIFDKQENVKELSGEITKGPAAPANNESGSSPWLSGKQFQGPRSRLRETEQGNNNNGQSKVHSLTVCNSGYDEVTTTSYVNKLIEDLQSQSDEVQTKAAEELRLLSKHNVENRIIIGRCGAITPLLLLLDSEVKITQEHAVTALLNLSISEDNKALIAEAGAIEPLIHAQQLLSHFRYQREGANGKGKA 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1228 432 Pfam Armadillo/beta-catenin-like repeat 352 391 IPR000225 GO:0005515
Lele08g1228 432 MobiDBLite consensus disorder prediction 167 181 - -
Lele08g1228 432 PANTHER U BOX DOMAIN-CONTAINING 107 412 - -
Lele08g1228 432 MobiDBLite consensus disorder prediction 259 305 - -
Lele08g1228 432 Coils Coil 327 347 - -
Lele08g1228 432 MobiDBLite consensus disorder prediction 266 281 - -
Lele08g1228 432 MobiDBLite consensus disorder prediction 288 305 - -
Lele08g1228 432 Gene3D - 294 420 IPR011989 -
Lele08g1228 432 MobiDBLite consensus disorder prediction 167 196 - -
Lele08g1228 432 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 363 405 IPR000225 GO:0005515
Lele08g1228 432 SUPERFAMILY ARM repeat 312 413 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1228 Lele-ChrLele08 7773949 7777103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1228 109 412 U-box Gene Family AT3G54790 41.748 1.19e-45 166