Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1225 ATGCCTTCATCTCCACCGTCCATTAAAAAGACAATCCTGGTCGTCCATACAATTAGGGATCAGTTCCTTCCTGGATCTGTTGACAATTGTATTTCCGTCAAACTGAGCTTCGAAATATACTTCCTCGGTCACCGTCGTGCTGCGGAGCCTAGAAGCCACCCTGTGACCCCATTCTCTCATCAAACTCCTTTGCTAAGGGAGATAATCTCCAGTTCCGTCGACGTTCGGAGCTCGTCCGTCGCCTTAAGGATTCTGCTAAAGCTCCATAACTCAAATCGACGAAACCGATGTTTAGTTGAGGATGCAGAAGCTTGGGGAGTCTTAGAAGTAGTTATGGAATCAAAAAATGGAAGGAAATCTGCGATATCCAAAAATAAAGAAATCCCTTCAGTTCCTCCTGGTTTTAGATCCCTTACCTCTTTCATACTAAAAAAGGTTGCAAAGACTGATATATCTGAATGTGGTCCAATTTGCATGGAGAGTATATTTCAGCTAAATGACACTTCTGCATATAAGGCAATTCTTAAGCATCGTCCATGGATACTTTTTCATCCAAGTGACCATGACCTTGAGAAATCCGACGCAGAGCATTTTCCTCAAGGTTTGTCTTCAAATGCTTGTCATCCAGAAGGGGTTACTCTTGGTTGTCCAGACTGTAGTGATTGTCTGAAGGTAAACGCAAGGTGGTGCCCTGAGGATGCAAGAAGAGATGTCCTTGATGAAGCTCAAATTTTCCGCCCAACAGAAGAGGAATTTAAAGACACACTTGAATATATTGCAAGCATACGTTCCAAAGCAGAGCCTTATGGAATTTGTCGTATCATTCCTCCTCCTACCTGGGAACCACTATGTCTTCCTGAGGAGAAAAACATATGGGAAAACTCCAAATTTGTTACTCAGATTCAGCGGATTGATGGACTTCAAGTTCAGTGCCAGCAAGAAGTTGTGGACGACTCTTCCAAAAATGCAGAGACCAAGACCATAAGAAGTCTAAGAGTAGCTTTGGACTCTCAACCTGGTAATGCAAACCCCCGCGATGTTGAAGATTCTGAGTCTAAACCTGGCCCTACCTTCAGTCTCAGTACATTTAAGAAATTTGCTGATGATTTCAAGGCCAAGTACTTCAACTGTGACAATAATGTTGTTGTGGGTTCTGATGAAAAGTGGGAGCCATCTGTGGAAAATATTGAGGGTGAGTATGGACGGATTATTCAAAATCCAACTCACAAAATTGAGGTGTTTTTTGGTAACAACTTGGGGGCTGGAGTTTTAAGCAGTGGTTTCCCAGTGGTGTCTGATATTCTGGAGTCACTCAAATATCCTGAATGTATGAGATCTGGATGGAACTTAAATAACACGCTTACACAATCTGGTTCTCTTCTTTTATTTGAAAGCTCTGAGATTTCGAGCAAATTTGCCCCTCGGGTTCACGTTGGAATGTGTTTTTCTTCATTCAATTGGAAAGTAGAAGAGCAACAGTTGTACAAATTGTGTTACATGCATGTGGGTGAGCCTAGAGTTTGGTATAGCATTCCGGGAAGATTTGCTGCTGACTTTGAAAGAGTGAGGAAGAAGCATCTCCCAGTTTTGTCTGCAGAACAGTCTGACTTGTGTGACAATTTGTTATCCTCCACCGTATTGAAGTCTGAGGGTATACCAGTACATCGCTGTGTTCAGTATCCCAGGGAGTTTGTTCTCGTCTTCCCAGGAGCATACCATTCTGGATTTGATTGTGGTTTCAATTGTTCTGAATCAGTCAGTTTTGCTCCTCTTGATTGGCTGCTTCATGGACAGAAAGTTGTAGAGTTATATTGTGAACAAAGGAGAAAGACTTCAATCTCATATGATAAGCTGTTGCTTGGGGCGGCAAGGAAAGCTGTTAGGGCACAATTTGAGATTGAACTCTGCGGAATGGGTACCCGAGATAATTTAAACTGGAAAGATGCATGTGGAAGGAATGGGATATTAACAAAAGCTTTTTATTTACGGAGAAAGAGTGAAAGATCAAAGAGGGAATTTCTTTGCGCTTCTCTGAAATCACAGAGAATGGAAAAAGATTTCGATGGCACTTGCAAAAGAGAATGTTGCATATGTCTGCGTGACTTACACTTATCTGCCATAGGTTGTCCATGTTCAACCGACAAATTTGCATGTCTTAATCATGCAAAGCAGCTCTGTCGTTGCCCTTGGAGTGACAGATTTATCCTCTGCCGATATGAAATCAGTGAGTTGGATACCCTTTCTCTTGCTTTGGAGGGAAAAGCAAGTGTTATCCACAAATGGGCCAAAGCCGATCTTGGATTAACTGTGCACTCCGTTGCCTCCAAAAGAAATGTGAGTGGTTCATCGGCTACTCCTTTGGCAAGAGAAGCATTTTTGAATTCACTGAAACGTAAAAGAGATGCAGCTGAGTCCGAGGATACGAGCACTGATGGTATCTCTTCCAGCATCGAGGCAAAATTGAAGTCACCTTTACCTGAATCTACATGTGTTGGTAAATCGAAGACGAAACAGTTGGAAAGAGAAGCTTTTTTGAATTCACTGAAACTGAAAAGAGACGCAGTCGAGTCCGAAGGGATGATCACGATCACTGATGGTATCTCTTCCAGCAATGAGGCAAAACTGAAGGCACGTATACCTGAATCAGCATGTGTAGGTAAATCGAAGGCAAAACAGAAAACAGTAGGCCACCAGTCTACGGAAACACACATTAAGAGTGGCCTCACTTCTGCTGCGGCCATTAAACCTGATCCCAAGTCAAGCAATGTTGAGTCATCAATTCCAGATTTGGCTAAAAATGACCCAAAAAAGGCTAGGGATTTTCTAGGTCTTAGTCTAACTTCAGGTTATATGGAACTGCTGCCTGAACTCAGGTCATTAGATGTTTCTTCAGGTAGTTCATCAGAATCCGATGATGACGCTTAA 2925 0.425 MPSSPPSIKKTILVVHTIRDQFLPGSVDNCISVKLSFEIYFLGHRRAAEPRSHPVTPFSHQTPLLREIISSSVDVRSSSVALRILLKLHNSNRRNRCLVEDAEAWGVLEVVMESKNGRKSAISKNKEIPSVPPGFRSLTSFILKKVAKTDISECGPICMESIFQLNDTSAYKAILKHRPWILFHPSDHDLEKSDAEHFPQGLSSNACHPEGVTLGCPDCSDCLKVNARWCPEDARRDVLDEAQIFRPTEEEFKDTLEYIASIRSKAEPYGICRIIPPPTWEPLCLPEEKNIWENSKFVTQIQRIDGLQVQCQQEVVDDSSKNAETKTIRSLRVALDSQPGNANPRDVEDSESKPGPTFSLSTFKKFADDFKAKYFNCDNNVVVGSDEKWEPSVENIEGEYGRIIQNPTHKIEVFFGNNLGAGVLSSGFPVVSDILESLKYPECMRSGWNLNNTLTQSGSLLLFESSEISSKFAPRVHVGMCFSSFNWKVEEQQLYKLCYMHVGEPRVWYSIPGRFAADFERVRKKHLPVLSAEQSDLCDNLLSSTVLKSEGIPVHRCVQYPREFVLVFPGAYHSGFDCGFNCSESVSFAPLDWLLHGQKVVELYCEQRRKTSISYDKLLLGAARKAVRAQFEIELCGMGTRDNLNWKDACGRNGILTKAFYLRRKSERSKREFLCASLKSQRMEKDFDGTCKRECCICLRDLHLSAIGCPCSTDKFACLNHAKQLCRCPWSDRFILCRYEISELDTLSLALEGKASVIHKWAKADLGLTVHSVASKRNVSGSSATPLAREAFLNSLKRKRDAAESEDTSTDGISSSIEAKLKSPLPESTCVGKSKTKQLEREAFLNSLKLKRDAVESEGMITITDGISSSNEAKLKARIPESACVGKSKAKQKTVGHQSTETHIKSGLTSAAAIKPDPKSSNVESSIPDLAKNDPKKARDFLGLSLTSGYMELLPELRSLDVSSGSSSESDDDA 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1225 974 SMART cupin_9 445 605 IPR003347 -
Lele08g1225 974 Pfam C5HC2 zinc finger 695 747 IPR004198 -
Lele08g1225 974 Pfam jmjN domain 244 276 IPR003349 -
Lele08g1225 974 Gene3D Cupin 227 589 - -
Lele08g1225 974 SUPERFAMILY Clavaminate synthase-like 356 627 - -
Lele08g1225 974 ProSiteProfiles JmjN domain profile. 242 283 IPR003349 -
Lele08g1225 974 SMART JmjN_1 241 282 IPR003349 -
Lele08g1225 974 PANTHER LYSINE-SPECIFIC DEMETHYLASE 236 898 - -
Lele08g1225 974 MobiDBLite consensus disorder prediction 892 907 - -
Lele08g1225 974 Pfam JmjC domain, hydroxylase 476 588 IPR003347 -
Lele08g1225 974 MobiDBLite consensus disorder prediction 888 935 - -
Lele08g1225 974 ProSiteProfiles JmjC domain profile. 442 605 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1225 Lele-ChrLele08 7740044 7747156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1225 127 782 JUMONJI Transcription Factor Family AT1G08620 45.283 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele08g1225 JmjC 9.3e-30 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1225 08 7740044 7747156 Lele08g1225 08 7740044 7747156 ECH
Lele07g1430 07 8670906 8676588 Lele08g1225 08 7740044 7747156 ECH
Lele05g1368 05 8600989 8610001 Lele08g1225 08 7740044 7747156 hybridization
Lele06g1229 06 7778793 7785869 Lele08g1225 08 7740044 7747156 hybridization