Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1205 ATGAAGTGCCTATGTTCAGGTGAGCAGTTAAGAGGAGCAGACGAAATGTTTCCTTCACCTGAATCTCATGCATCCAAGGATTATTCAGTGAGTGGGGATTCTTGCAAAGCTGGAGAAGTTGACAAGAAGAAGCCAGACACTGGTAATATAGAAGAAGCTGAATCATCCCTTCGTGAGAGTGGTTACTTGAACTACGAGGAAGCTAGAGCTCTGTTAGGAAGATATGAATTTCAGAAAGGCAACATTGAAGCCGCTTTACATGTTTTTGAAGGAATAGATATAGGCGCTGTGACTCCTAAAATTAAAATTTCCCTTGCCCAAAGGGAAGAACAACCTAAGAGATATAAGAGGCATTCCCAGCATAATTCTGCACCCCCAATGTCAATACATGCTGTTGGTCTACTGTTGGAAGCGGTACTCCTGAAAGCAAAATCGTTGCAGGCTCTTGGAAGATTTAAAGAAGCTGCCCAATCTTGCAAAGTTATTCTGGACATAGTTGAATCTTCATTACCTGAAGGTTTGCCTGAAAACTTTGGTGCTGAATGTAAATTGCAGGAGACTCTGAGCAATGCGGTTGAGTTGCTTCCAGAACTATGGAAACTTGCTGATTGTCCACGTGAAGCTATTGTGTCTTATAGGAGGGCACTTCTTCATCAATGGAATCTTGATGCAGAGACAACAGCAAAGATTCAGAAAGAGTTTGTCATATTTCTTCTATATAGTGGGGGGGAAGCAAACCCCCCAAATCTCCGTTCTCAAATGGACAGCTCATTTGTGCCCAGAAACAACATAGAAGAGGCTATACTTCTTTTGATGATTTTGGTAAGAAAAGTCACTTTGAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTTTCATTTGCTCTATCTGTTTCCGGGGATTTGACAACTCTAGCTAATCAATTGAAAGAATTGCTCCCTGGGACTGTCAGCCGAAGAGAAAGGTATTTTACTCTGGCTCTCTGTTATTTTGGAGCTGGAAAGGAATTGATGGCAATGGATCTTCTCAGAAAAGTGTTGAGTAGTAAAGAGGACCCTAAACATATTCCAGCTTTGTTAATGGCATCTAAAATATGTTCTAAGAACCCTGGTCTTGCAGAAGAAGGGGTAAGCTTTGGTTCCAGAGTGCTTGAGAGCTTGGGTGATAGATGTGATAAGTTAGAAAGTGTTGCCAATTGCTTACTTGGCGTTTCACATTCAGCAAATTCGAAATTAGCCATTTCTGATTCTGAGAGGTTTGAGAGGCAATCTGAGGCACTTCGTGCTCTGGAAACTGCTGGCAAAATGACTCGAATGAGAGACTACAATGTATTATATTATCTAAGTTTAGAATATGCGGAACAGAGAAAGTTGGATGCTGCACTTTATTGTGCAAAATGCCTTCTAAAACTGGAAGCTGGGTCTAATGTCAAAGGGTGGCTGTTATCAGCTCGAATATTATCAGCTAAAAAACGGTTTTCAGATGCTGAATCTATTATCAACGCTGCTTTGGATCAGACTGGGAAATGGGATCAAGGGGATTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGTTAAGGAGTGCCATTGAGACATATACTCAACTTCTTGCTGTTTTTCAAGTTCAGAGGAAAACATTTGGCTCTGGGAAGAAGCTATATATGGAGAACAGAGATCATGCTAGGAACCTGGAAGTCGAAGTATGGCATGATCTTGCCTGTGTATATATAAACCTGTCACAGTGGCATGATACTGAGATGTGTCTTTCTAAGTCTAAGGCCATCAAACTTTACTCTGCTTCTAGATGTCATACAACAGGACTGCTGTATGAAGCAAAGGGTCTCTACACAGAGGCTTTGAAGGCTTTTGGTGATGCTTTGAACATTGATCCCAATTATGCCCCAAGCTTGATTTCCAGTGCAATGGTTCTGAGACGGCGCAGTAGCAGTAAGGAATCAAATGCTGTAGTGAGAAGCTTTTTGATGGATGCACTGCGCCATGATAGATTGAATGCTGGTGCATGGTATAATCTTGGCCTTGTTCACAGGGATGAGGGCACAGTCTCGTCATTAATGGAAGCTGCGGAATGTTTCGAGGCTGCTCATTTTCTTGAAGAAACTTCGCCTGTTGAATCTTTCAGATGA 2157 0.4177 MKCLCSGEQLRGADEMFPSPESHASKDYSVSGDSCKAGEVDKKKPDTGNIEEAESSLRESGYLNYEEARALLGRYEFQKGNIEAALHVFEGIDIGAVTPKIKISLAQREEQPKRYKRHSQHNSAPPMSIHAVGLLLEAVLLKAKSLQALGRFKEAAQSCKVILDIVESSLPEGLPENFGAECKLQETLSNAVELLPELWKLADCPREAIVSYRRALLHQWNLDAETTAKIQKEFVIFLLYSGGEANPPNLRSQMDSSFVPRNNIEEAILLLMILVRKVTLNRIEWDPSILDHLSFALSVSGDLTTLANQLKELLPGTVSRRERYFTLALCYFGAGKELMAMDLLRKVLSSKEDPKHIPALLMASKICSKNPGLAEEGVSFGSRVLESLGDRCDKLESVANCLLGVSHSANSKLAISDSERFERQSEALRALETAGKMTRMRDYNVLYYLSLEYAEQRKLDAALYCAKCLLKLEAGSNVKGWLLSARILSAKKRFSDAESIINAALDQTGKWDQGDLLRTKAKLQIAQGQLRSAIETYTQLLAVFQVQRKTFGSGKKLYMENRDHARNLEVEVWHDLACVYINLSQWHDTEMCLSKSKAIKLYSASRCHTTGLLYEAKGLYTEALKAFGDALNIDPNYAPSLISSAMVLRRRSSSKESNAVVRSFLMDALRHDRLNAGAWYNLGLVHRDEGTVSSLMEAAECFEAAHFLEETSPVESFR 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1205 718 PANTHER PROTEIN NPG1 1 718 IPR043376 -
Lele08g1205 718 ProSiteProfiles TPR repeat profile. 604 637 IPR019734 GO:0005515
Lele08g1205 718 Gene3D Tetratricopeptide repeat domain 46 569 IPR011990 GO:0005515
Lele08g1205 718 SMART tpr_5 514 547 IPR019734 GO:0005515
Lele08g1205 718 SMART tpr_5 136 169 IPR019734 GO:0005515
Lele08g1205 718 SMART tpr_5 478 511 IPR019734 GO:0005515
Lele08g1205 718 SMART tpr_5 604 637 IPR019734 GO:0005515
Lele08g1205 718 SMART tpr_5 443 476 IPR019734 GO:0005515
Lele08g1205 718 SMART tpr_5 321 354 IPR019734 GO:0005515
Lele08g1205 718 SMART tpr_5 676 712 IPR019734 GO:0005515
Lele08g1205 718 SMART tpr_5 570 603 IPR019734 GO:0005515
Lele08g1205 718 MobiDBLite consensus disorder prediction 13 55 - -
Lele08g1205 718 SUPERFAMILY TPR-like 515 690 IPR011990 GO:0005515
Lele08g1205 718 Pfam Tetratricopeptide repeat 607 637 IPR019734 GO:0005515
Lele08g1205 718 Gene3D Tetratricopeptide repeat domain 570 714 IPR011990 GO:0005515
Lele08g1205 718 MobiDBLite consensus disorder prediction 36 53 - -
Lele08g1205 718 SUPERFAMILY TPR-like 322 596 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1205 Lele-ChrLele08 7602111 7606901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1205 1 718 Calmodulin-binding Proteins AT4G28600 57.280 0.0 779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2368 13 29372247 29372995 Lele08g1205 08 7602111 7606901 CCT
Lele14g2297 14 27700061 27710881 Lele08g1205 08 7602111 7606901 CCT
Lele15g0052 15 314036 318275 Lele08g1205 08 7602111 7606901 CCT
Lele16g0054 16 349118 355066 Lele08g1205 08 7602111 7606901 CCT
Lele08g1205 08 7602111 7606901 Lele08g1205 08 7602111 7606901 ECH
Lele05g1349 05 8470778 8475811 Lele08g1205 08 7602111 7606901 hybridization
Lele06g1211 06 7609311 7617306 Lele08g1205 08 7602111 7606901 hybridization