Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1203 ATGGAGGACTCTGGGAAGCATGGCAATAACAGTAAATTCTTGAACCCATGGATGCTTCAGCTCCAGAAAATGGGTCTTGAACTCAAGTGCCCTCTCTGTTTGAACTTGTTCAAAAGGCCGACGTTACTTCCATGCAACCACATATTCTGCAGCTCCTGCATAGCTGATTGCTCAAGGCCTAGTTCAGAATGCGCTGTCTGTAATATTCATTATGCTCATAGAGATCTGAGGTCTCTGCCTATTGTGGAAAACATGGTTGCAATTTATAAAAGCCTGGATGCTGCCTTTTATGCCAATCTATCTCAGCATCATTCTGATGAGCTGCCATTTTTGGAGCGGTGTGAAACACTGTGGAATGTGACTTTTGATCATAAAATGTCCAAGGAGCCGTCCAAAACATCCCTAGGAGATAATCTACATAGGCAGTGGTCAGTCTTTCCACAAACAATAGCTAAACGTGTTAAGTGTCCTTTCAGTTTAGACCATTCTATGGAAGTTGATATTGGCAAGAATCACAAATATGAGAAGAGTGGTAATGTGGTTCATGGTAAAGATAAGGAGTTTAAGGTTTCTTGCAAGGAAGAGATTCTAATGAAATGTTCCCAACTGGATGGAAGGGCCCATGAAGATTGTGGGCTTGTGGAAATGGACATAAATCAAGTTACTCAATTGTCACCCAGGCAGCCCTCTCCATTTTGTTATACAAAAGGTTCAGACAATGACTGCAGTGACCAGGGCAGTGCACATCGCTTGCCTGCTGAGAGATTAGAAAGTTCTTCATCAAAGAGGGCAAGCAAAGAAAATGAAATATTGGAAAAAAGGATCCAGTTGAGGTCTGAAAGCTCTGCCTCCGAAACAGAGGGTCTTGTGAGAGACTCCAAGAGGTCAAAAAATCTTTCACATGACAATGATGACATTCAACCTAATGTAACCCATCAAAGTAAGCCCATGACTTCTGAATGTAATATGGACCTTAAATCCGGGATTGACCTGGATTCAAGTTCAAATACAAGCTTGTGTTCTTTTTGCCAGTCTTCTAGAACCTCAGAGGTTACTGGGCCTATTTTGCATTATAAAAATGGAAACTTGGTGACGGGAGTTGCAGCACTCCAACCAAATGTCATACATGTGCATAGACTATGCGTTGAATGGTCACCTCAAGTGTATTTTGTTGATGAAAGTGTTAAAAATTTGAAGGCAGAAGTGGCAAGGGGAGCAAAGCTAAAATGCAGTAAATGTGGCCAAAAGGGGGCTGCTCTTGGATGCCATGTTAGATCCTGTATGAGAACTTATCATGTTCCTTGTGCGATGGAAATCTCAGCTTGCCGTTGGGATGATATTGAACTAAACATAGGCTTATTCGATGGCCAGGAGGAATATCTTATGCTCTGTCCGGCTCATTCTTGTGTCAAATTTCCACGTGAGAAATCCAGTTCTAAGAAACAGGGCTCCCAGAAGCATCCTGTGTCATCTCATTTGGCATCTAAGCTGTCAAAACCCCCAATAGTTTTGTCAGATGATAGTAAACGTTTGGTTTTCTGTGGATCTGCTCTGTCTACAAATGAAAAGATACATTTGATCAATTTTGTAAGTAGGATTGGTGCTACTGTTACCAAGTTTTGGACGCCAGATGTGACACATGTGATTGCAGCAACTGATTCAAATGGAGCATGCGCCAGGACACTTAAAGTTCTTATGGGCATTTTAAATGGGCAATGGATTCTTAAAATGGACTGGGTAACTGCAAGCATGGAGGTAATGCGTACTGTGGAAGAAGAGCCATATGAAATAAGTCTTGATAACTATGGCTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGCGCCCAAGCTATTTAGCGGCTTTAGTATGTACTTTTCTGGCGATTACATGCCAGATTATAAGGGGGATCTTGTAGAGTTGGTTGTAGCAGGAGGAGGTTCTGTTTTGGAAAGCAAGGAAGAATTGCAAACAGAAGGCCATGAATGTGAGGAGACCTCAAAGCTGATTGTTTACAATCTTGATCCCCCACAAGGAAGTAGGTTGGGGGATGAAGTTACAATTCTTTGGGAGAGATTAAACGAGGCAGAGGATTTAGCTGCTACAACTGGTTCACAAGTCGTTGGTCACACGTGGATTTTGGAGTCAGTTGCTGCATTCAAGTTACAGCCTTTTATGAGTTAG 2196 0.4244 MEDSGKHGNNSKFLNPWMLQLQKMGLELKCPLCLNLFKRPTLLPCNHIFCSSCIADCSRPSSECAVCNIHYAHRDLRSLPIVENMVAIYKSLDAAFYANLSQHHSDELPFLERCETLWNVTFDHKMSKEPSKTSLGDNLHRQWSVFPQTIAKRVKCPFSLDHSMEVDIGKNHKYEKSGNVVHGKDKEFKVSCKEEILMKCSQLDGRAHEDCGLVEMDINQVTQLSPRQPSPFCYTKGSDNDCSDQGSAHRLPAERLESSSSKRASKENEILEKRIQLRSESSASETEGLVRDSKRSKNLSHDNDDIQPNVTHQSKPMTSECNMDLKSGIDLDSSSNTSLCSFCQSSRTSEVTGPILHYKNGNLVTGVAALQPNVIHVHRLCVEWSPQVYFVDESVKNLKAEVARGAKLKCSKCGQKGAALGCHVRSCMRTYHVPCAMEISACRWDDIELNIGLFDGQEEYLMLCPAHSCVKFPREKSSSKKQGSQKHPVSSHLASKLSKPPIVLSDDSKRLVFCGSALSTNEKIHLINFVSRIGATVTKFWTPDVTHVIAATDSNGACARTLKVLMGILNGQWILKMDWVTASMEVMRTVEEEPYEISLDNYGCQGGPKAGRLRALANAPKLFSGFSMYFSGDYMPDYKGDLVELVVAGGGSVLESKEELQTEGHECEETSKLIVYNLDPPQGSRLGDEVTILWERLNEAEDLAATTGSQVVGHTWILESVAAFKLQPFMS 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1203 731 Pfam PHD-like zinc-binding domain 378 468 - -
Lele08g1203 731 SUPERFAMILY RING/U-box 20 88 - -
Lele08g1203 731 Pfam BRCA1 C Terminus (BRCT) domain 525 583 IPR001357 -
Lele08g1203 731 ProSiteProfiles Zinc finger RING-type profile. 30 68 IPR001841 -
Lele08g1203 731 ProSiteProfiles Extended PHD (ePHD) domain profile. 337 468 IPR034732 -
Lele08g1203 731 CDD ePHD 340 467 - -
Lele08g1203 731 Gene3D BRCT domain 619 725 IPR036420 -
Lele08g1203 731 ProSiteProfiles BRCT domain profile. 511 597 IPR001357 -
Lele08g1203 731 FunFam Breast cancer type 1 susceptibility protein homolog 508 614 - -
Lele08g1203 731 MobiDBLite consensus disorder prediction 248 302 - -
Lele08g1203 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 470 IPR013083 -
Lele08g1203 731 MobiDBLite consensus disorder prediction 225 317 - -
Lele08g1203 731 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Lele08g1203 731 SMART ring_2 410 467 IPR001841 -
Lele08g1203 731 SMART ring_2 30 67 IPR001841 -
Lele08g1203 731 SMART BRCT_7 501 587 IPR001357 -
Lele08g1203 731 SMART BRCT_7 620 724 IPR001357 -
Lele08g1203 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 100 IPR013083 -
Lele08g1203 731 MobiDBLite consensus disorder prediction 303 317 - -
Lele08g1203 731 Pfam Zinc finger, C3HC4 type (RING finger) 30 67 IPR018957 GO:0046872
Lele08g1203 731 SUPERFAMILY BRCT domain 622 729 IPR036420 -
Lele08g1203 731 MobiDBLite consensus disorder prediction 225 245 - -
Lele08g1203 731 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 258 729 IPR031099 GO:0006281|GO:0006974
Lele08g1203 731 CDD BRCT_Bard1_rpt1 511 585 - -
Lele08g1203 731 ProSiteProfiles BRCT domain profile. 618 731 IPR001357 -
Lele08g1203 731 Gene3D BRCT domain 507 613 IPR036420 -
Lele08g1203 731 SUPERFAMILY BRCT domain 511 598 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1203 Lele-ChrLele08 7583929 7588858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1203 541 654 Core DNA Replication Machinery Family AT4G02110 31.092 5.09e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1203 08 7583929 7588858 Lele08g1203 08 7583929 7588858 ECH
Lele05g1346 05 8449265 8454568 Lele08g1203 08 7583929 7588858 hybridization
Lele06g1209 06 7596542 7597343 Lele08g1203 08 7583929 7588858 hybridization